GgaEX1053900 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3605850-3821505:+
Coord C1 exon
chr13:3605850-3605921
Coord A exon
chr13:3630032-3630103
Coord C2 exon
chr13:3821434-3821505
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTCTAACATTTTAGGCG
3' ss Score
6.9
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ACACTTGGAAGAAAATCAGATCAGTGTGATAGAACGTGGAGCGTTTCAGGATCTAAAGCAACTTGAACGACT
Seq A exon
GCGTCTGAACAAGAACAAATTGCAAGTTCTTCCAGAGCTCCTTTTTCAGAACACGCAGAAGTTAACCAGATT
Seq C2 exon
AGACCTCAGTGAAAACCAGATAAAAGGAATCCCTAGAAAGGCCTTTCGAGGAATCATTGACGTGAAGAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'3-23,'3-11,4-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(40.0=72.0),PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTGGAAGAAAATCAGATCAGTG
R:
AGTTCTTCACGTCAATGATTCCTCG
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]