DreEX0075594 @ danRer10
Exon Skipping
Gene
ENSDARG00000058473 | st6galnac3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1329]
Coordinates
chr2:9538416-9619689:-
Coord C1 exon
chr2:9619495-9619689
Coord A exon
chr2:9583995-9584404
Coord C2 exon
chr2:9538416-9538523
Length
410 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTTCTCTCCTTTAGCCG
3' ss Score
9.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAGAAGTCAGTGATAGTTACCAGCCTTATCGTGGTGGTGTCTCTGTTTTTGGTGGTGATTAACTGTTCGGAGAAACCCTACTTCCTACTGCAGCCTGTATTCGGCCAAAGCTTCAGCAGAAACTGGATGTTCTCTCGTCCACCACACAAAGCCTCCAAACCTCACCACGGCTATCTCAGCGTTCCTAACCTGGAG
Seq A exon
CCGCTGAAGCTGCATTGTGAGGTCTGCAGTGTAGTGTCCAGCTCTGGCCAGATATTGGGACGTGAGGCAGGGGCTGACATTGACCAGTCCTCTTGCATATGGAGAATGAACAATGCACCCACCCGGGGCTTTGAGAGGGATGTGGGACACAGGACAGACCTGAGGGTTGTGTCTCACACAAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTCGGACAGGGGAATGAGACCGTCTATGTGGTCTGGGGACCACTGCGCAACATGAGGCAGGATGGGAAAGGCATTGTTTACAACATGCTGCGACAAGCGGTTGAAAACTACCCACAGGCTCGCATTTACGTCACCACAGAAGAGCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAGACCGGCAAAGACAG
Seq C2 exon
GATTCAGTCGGGGTCGTACCTGAGCACTGGTTGGTTCACGCTTATTCTGGCAATGGACATGTGCAAGGAGATTCGAGTCTACGGCATGATCAATGACACATACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058473-'1-5,'1-3,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(14.1=58.5)
A:
PF0077713=Glyco_transf_29=FE(50.4=100)
C2:
PF0077713=Glyco_transf_29=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCAGTGATAGTTACCAGCCT
R:
TTGCAGTATGTGTCATTGATCATGC
Band lengths:
302-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]