RnoEX0086471 @ rn6
Exon Skipping
Gene
ENSRNOG00000056894 | St6galnac3
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:RGD Symbol;Acc:3677]
Coordinates
chr2:259382656-259689040:-
Coord C1 exon
chr2:259688846-259689040
Coord A exon
chr2:259591896-259592305
Coord C2 exon
chr2:259382656-259382763
Length
410 bp
Sequences
Splice sites
3' ss Seq
TGCACTTCTCTCTCTTTCAGCCT
3' ss Score
11.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGGAAGCCTGCGCTTGCGGTGAGCTTCATAGCCCTGTGCATCTTGCTGCTAGCCATGCGCCTTGCCAATGACGTGACTTTCCCTTTGCTCCTGAACTGCTTTGGACAACCTAAAACCAAATGGATCCCTTTGTCCTACACACTCAGGCAGCCTCTTCAAACTCACTATGGATACATAAACGTGAGGACCCAAGAG
Seq A exon
CCTTTGCAGCTGAACTGTAACCATTGTGCCGTCGTGTCGAACTCGGGTCAGATGGTTGGACAGAAGGTGGGGGAAGAGATAGACCGTGCGTCCTGCATCTGGAGAATGAACAATGCCCCCACCAAGGGTTTCGAGGAAGATGTCGGCTACATGACGATGGTCCGAGTGGTGTCACACACCAGCGTCCCTCTCTTGCTGAAAAACCCGGACTATTTTTTCAAGGAGGCGAGCACAACCATTTACGTCATCTGGGGCCCTTTCCGCAACATGAGGAAGGACGGGAACGGGATCGTGTACAACATGCTAAAGAAGACGGTCGACACCTACCCAGACGCGCAGATCTACGTGACCACGGAGCAGCGGATGACGTACTGCGACGGGGTGTTTAAGGATGAAACTGGGAAAGACAG
Seq C2 exon
AGTCCAGTCTGGCTCCTATCTCAGCACCGGGTGGTTCACCTTTATCCTGGCCATGGACGCCTGCTACAGTATCCACGTCTACGGGATGATAAATGAGACCTACTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056894_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(10.9=43.1)
A:
PF0077713=Glyco_transf_29=FE(52.7=100)
C2:
PF0077713=Glyco_transf_29=PU(38.3=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATAGCCCTGTGCATCT
R:
GCAGTAGGTCTCATTTATCATCCCG
Band lengths:
279-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]