GgaEX0013258 @ galGal4
Exon Skipping
Gene
ENSGALG00000009027 | ST6GALNAC3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
Coordinates
chr8:18287377-18394021:-
Coord C1 exon
chr8:18393809-18394021
Coord A exon
chr8:18350853-18351262
Coord C2 exon
chr8:18287377-18287484
Length
410 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTCTCTCTTCCAGCCT
3' ss Score
11.21
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATTTTCTTTTTATTACAGAGAAAGTCTGTTGTTGCTGTGAGTTTCATTGCAGCCTTCCTCTGTCTGATCATCGTTCGTCTCACAAATGAAGTCACTTTCCCTTTGATTCTAAACTGCTTTGGACAAACCAGTGTCAAGTGGATACCATTTTCTAATGGCCAAAGGCAGCTTCTGAGAACTCACTACGGATACATAAATGTGAAAACACAAGAG
Seq A exon
CCTCTACAACTGGACTGTGACCTCTGTGCCATTGTTTCCAATTCAGGACAGATGGTAGGCCAGAAGGTGGGAGCTGAGATAGACAAGTCCTCCTGCATTTGGAGAATGAACAATGCACCCACAAAGGGCTATGAGGAGGATGTTGGGAAGAGGACGACCATCAGAGTGGTCTCTCACACAAGCGTGCCTCTCCTACTCAAGAATCCCGAGTACTTTTTCAAAGAAACCAACAGCACTCTTTATGTGATCTGGGGACCTTTTCGAAACATGAGGAAGGATGGAAATGGCATTGTATACAACATGCTGAAGAAAGCTGTTGACAGCTACCCAACTGCCAAAATCTATGTGACAACGGAAAAGCGCATGAGTTACTGCGATGCAGTGTTTAAGAAGGAGACAGGAAAAGACCG
Seq C2 exon
AGTCCAGTCAGGTTCATATCTCAGTACGGGTTGGTTTACCTTAATTTTGGCTATGGATGCCTGCTATGGAATTCACGTCTATGGGATGATAAATGACACCTACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009027-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(11.2=40.8)
A:
PF0077713=Glyco_transf_29=FE(52.3=100)
C2:
PF0077713=Glyco_transf_29=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTCTGTTGTTGCTGTGAGT
R:
TGCAGTAGGTGTCATTTATCATCCC
Band lengths:
302-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]