HsaEX1039129 @ hg38
Exon Skipping
Gene
ENSG00000184005 | ST6GALNAC3
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
Coordinates
chr1:76313805-76627559:+
Coord C1 exon
chr1:76313805-76313999
Coord A exon
chr1:76412008-76412417
Coord C2 exon
chr1:76627452-76627559
Length
410 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTCTATTTTTCAGCCT
3' ss Score
9.62
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAAAGTCTGTGATTGCTGTGAGCTTCATAGCAGCGTTCCTTTTCCTGCTGGTTGTGCGTCTTGTAAATGAAGTGAATTTCCCATTGCTACTAAACTGCTTTGGACAACCTGGTACAAAGTGGATACCATTCTCCTACACATACAGGCGGCCCCTTCGAACTCACTATGGATACATAAATGTGAAGACACAAGAG
Seq A exon
CCTTTGCAACTGGACTGTGACCTTTGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGGTGGGAAATGAGATAGATCGATCCTCCTGCATTTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGAAGATGTCGGCCGCATGACCATGATTCGAGTTGTGTCCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCTGATTATTTTTTCAAGGAAGCGAATACTACTATTTATGTTATTTGGGGACCTTTCCGCAATATGAGGAAAGATGGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGGTATCTATCCGAATGCCCAAATATACGTGACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGGAAACTGGGAAGGACAG
Seq C2 exon
AGTCCAGTCTGGCTCATATCTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGCCTGTTATGGCATTCACGTCTACGGGATGATAAATGACACCTACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184005-'9-38,'9-25,11-38
Average complexity
C1
Mappability confidence:
95%=100=93%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(13.7=29.2)
A:
PF0077713=Glyco_transf_29=PD(84.9=86.1)
C2:
PF0077713=Glyco_transf_29=FE(14.5=100)
Main Skipping Isoform:
ENST00000328299fB31314
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTCTGTGATTGCTGTGAGC
R:
TTGCAGTAGGTGTCATTTATCATCCC
Band lengths:
302-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains