DreEX0076286 @ danRer10
Exon Skipping
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:52988913-52989411:+
Coord C1 exon
chr3:52988913-52988962
Coord A exon
chr3:52989062-52989143
Coord C2 exon
chr3:52989335-52989411
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTTTTATATTCAGGTG
3' ss Score
9.97
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
AAATCCTCAGTGGAGTCATCAAGAGTGTGAAGAAAGATGGGGACTGGAAG
Seq A exon
GTGCTCATCGTTGATCATATCAGTATGCGGATTCTGTCCTCGTGCTGTAAAATGTCTGACATCATGGCAGAGGGTGTTACAA
Seq C2 exon
TTGTGGAGGACATCAGCAAACGAAGGGAGCCGATCCCCAGTCTGGAAGCCATTTACCTCATCTCACCTGTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=FE(13.8=100)
C2:
PF0099518=Sec1=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAGTGGAGTCATCAAGAGT
R:
TTGGCACAGGTGAGATGAGGT
Band lengths:
122-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]