GgaEX6014911 @ galGal4
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr17:2439728-2440296:+
Coord C1 exon
chr17:2439728-2439778
Coord A exon
chr17:2439894-2439975
Coord C2 exon
chr17:2440220-2440296
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTGATGGCTGCTGTCCTCAGGTG
3' ss Score
8.39
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GAAATTATGCACGATGTGATCCGGAAGGTGAAGAAGAAGGGGGAATGGAAG
Seq A exon
GTGCTGGTGGTGGACCAGCTCAGCATGCGCATGCTGTCCTCCTGCTGCAAAATGACCGACATCATGACGGAGGGCATCACCA
Seq C2 exon
TTGTGGAGGACATCAACAAGCGCCGGGAGCCGCTGCCCAGCCTGGAGGCTGTCTATCTCATCACACCCTCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=FE(4.9=100)
C2:
PF0099518=Sec1=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTATGCACGATGTGATCCGG
R:
TTCTCGGAGGGTGTGATGAGA
Band lengths:
127-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]