MmuEX0045614 @ mm10
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32819834-32823585:-
Coord C1 exon
chr2:32823536-32823585
Coord A exon
chr2:32821835-32821916
Coord C2 exon
chr2:32819834-32819910
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGCTCTCCTCTTCCTTCCAGGTG
3' ss Score
11.32
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGATCATGCATGATGTGATCAAGAAGGTGAAGAAGAAGGGCGAGTGGAAG
Seq A exon
GTGCTGGTGGTGGACCAGTTAAGCATGAGGATGCTGTCCTCCTGCTGCAAGATGACAGACATCATGACCGAGGGCATCACAA
Seq C2 exon
TTGTGGAGGATATCAACAAGCGCCGAGAGCCACTCCCCAGCCTGGAGGCCGTGTACCTCATCACCCCATCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'17-6,'17-5,20-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.093 C2=0.117
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=PU(19.0=95.0)
C2:
PF0099518=Sec1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATGCATGATGTGATCAAGA
R:
CTTCTCAGATGGGGTGATGAGG
Band lengths:
127-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types