DreEX0076280 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13788591-13790801:+
Coord C1 exon
chr21:13788591-13788640
Coord A exon
chr21:13788872-13788953
Coord C2 exon
chr21:13790725-13790801
Length
82 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTTTCTCTCTGTAGGCT
3' ss Score
10.69
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
AGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGAGAATGGAAG
Seq A exon
GCTTTGATAGTGGACCAGCTCAGCATGAGGATGTTGTCGTCCTGCTGCAAAATGACTGATATCATGACAGAGGGCATCACTA
Seq C2 exon
TTGTTGAAGACATCATGAAACGGAGAGAACCTCTTCCCTCACTGGAGGCCATTTACCTGATCACCCCAACTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=FE(4.9=100)
C2:
PF0099518=Sec1=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGATGTCATCAAGAAGGTGA
R:
TGTCAGTTGGGGTGATCAGGT
Band lengths:
119-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]