RnoEX0087361 @ rn6
Exon Skipping
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11857185-11861027:-
Coord C1 exon
chr3:11860978-11861027
Coord A exon
chr3:11859266-11859347
Coord C2 exon
chr3:11857185-11857261
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCCTCTTCCTTCCAGGTG
3' ss Score
11.58
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
AGATCATGCATGATGTTATCAAGAAGGTGAAGAAGAAGGGCGAGTGGAAG
Seq A exon
GTGCTGGTGGTGGACCAGTTAAGCATGAGGATGCTGTCTTCCTGCTGCAAGATGACAGACATCATGACCGAGGGGATCACAA
Seq C2 exon
TTGTGGAGGATATCAACAAGCGCCGAGAGCCGCTCCCCAGCCTAGAGGCCGTGTACCTCATCACCCCGTCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420-'6-8,'6-7,10-8
Average complexity
S
Mappability confidence:
91%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=FE(4.9=100)
C2:
PF0099518=Sec1=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATGCATGATGTTATCAAGAAG
R:
CTTCTCAGACGGGGTGATGAG
Band lengths:
127-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]