GgaEX6014911 @ galGal3
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
NA
Coordinates
chr17:2826754-2827321:+
Coord C1 exon
chr17:2826754-2826803
Coord A exon
chr17:2826919-2827000
Coord C2 exon
chr17:2827245-2827321
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTGATGGCTGCTGTCCTCAGGTG
3' ss Score
8.39
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AAATTATGCACGATGTGATCCGGAAGGTGAAGAAGAAGGGGGAATGGAAG
Seq A exon
GTGCTGGTGGTGGACCAGCTCAGCATGCGCATGCTGTCCTCCTGCTGCAAAATGACCGACATCATGACGGAGGGCATCACCA
Seq C2 exon
TTGTGGAGGACATCAACAAGCGCCGGGAGCCGCTGCCCAGCCTGGAGGCTGTCTATCTCATCACACCCTCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
PF0099518=Sec1=FE(5.9=100)
C2:
PF0099518=Sec1=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTATGCACGATGTGATCCGGA
R:
CTTCTCGGAGGGTGTGATGAG
Band lengths:
127-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]