MmuEX0045619 @ mm9
Exon Skipping
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3632220-3633367:+
Coord C1 exon
chr8:3632220-3632269
Coord A exon
chr8:3632500-3632581
Coord C2 exon
chr8:3633291-3633367
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATACCCATTCATCTGGTCAGGTC
3' ss Score
6.09
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AAATTTTAAGCGGCGTCATCCGGAGCGTTAAGAAGGATGGCGAGTGGAAG
Seq A exon
GTCCTCATCATGGATCACCCGAGCATGCGAATCTTGTCATCCTGTTGTAAAATGTCAGATATCCTGGCGGAGGGCATCACCA
Seq C2 exon
TCGTGGAAGACATCAACAAACGGAGAGAACCCATTCCCAGCTTGGAGGCAATTTATTTGCTGAGTCCCACGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626_MULTIEX1-2/6=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.6)
A:
PF0099518=Sec1=FE(4.9=100)
C2:
PF0099518=Sec1=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTTAAGCGGCGTCATCC
R:
CTTCTCCGTGGGACTCAGCAA
Band lengths:
127-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types