DreEX0078095 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62534032-62536301:-
Coord C1 exon
chr5:62536069-62536301
Coord A exon
chr5:62534758-62534937
Coord C2 exon
chr5:62534032-62534602
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGACCTCTAATGCAGGGT
3' ss Score
6.68
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCCGATTTTACAGACGTGGAGAGGTTTTCTGGCTGTCAGACCAGTGTACTCAACGATGTAGGTGTCTTGACCTGGATAATGAGGTCATCTGCCATGAAACACCATGTGGTCAGTTAGAGACCTGTGAACAGGTGGAAGGGGCTTACTACTGCCAGCCCACACGCACCAGCACCTGTGTGGTGTTTGGAGACCCTCACTACCACACCTTTGATGGGTTCCTCTATCACTTTCAG
Seq A exon
GGTACTTGCTCATACCTGTTGGCTCGCCCATGCTGGGAAATGCCTGGTTTGCCCTTTTTCAGTGTGGAGGCCAAGAATGAGAACCGTGGTGTGCCCACGGTGTCCTGGCTGCGGGACGTGACAGTAGAGGTGTACAATCACCGTGTTACACTACCCAAAGGAACTCTGGGAACTGTGCAG
Seq C2 exon
GTGGATGGCCTGATAAAGACTCTCCCTGTTCAACTTCAGCTAGGCGCAGTCAAGGTATACCAATCTGGCGTTGCTGTCGCTTTGGAAACAGACTTTGGTCTCTTGGTGACCTATGACGGATTGCACTACGCCTCCATCTCCCTCCCCAGCTCTTATTTCAACAACACTTGCGGCCTATGTGGTAACTACAACGATGACCCTGCCGATGACCCTGTGTTGCCAGATGGCTCTCTGGCAGAGAGCGTAGTGGAACTGGGTGGTAGCTGGCGAGCTGAAGACACAGATTTTCGTTGTACAGACGGCTGTGCCCAGAACTGTAGCATGTGTGAACCGGCAGCTGAAGCATTTTACTTTCGATCAGACTACTGTGGGCTCATCAATAAGACTGATGGGCCATTCAGAGACTGCAGGGCTGTGGTAGACCCAACAGCATTTGTTTACAGCTGCGTTTATGATATGTGCAGCAATCGTGATAACATCACCACCCTGTGCCAAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.5=65.4),PF0009420=VWD=PU(12.1=24.4)
A:
PF0009420=VWD=FE(37.6=100)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTGGTGTTTGGAGACC
R:
ACATAGGCCGCAAGTGTTGTT
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]