GgaEX6025631 @ galGal3
Exon Skipping
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3579332-3582489:-
Coord C1 exon
chr24:3582324-3582489
Coord A exon
chr24:3580259-3580671
Coord C2 exon
chr24:3579332-3579902
Length
413 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCATGCTTTTTAGGGC
3' ss Score
10.64
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGGCTTCAATGGTGGAAATATCAGCAACTTCTTCAGCATCCCAGGCTCCAGAACCCCAGACATAGTCAATATAGAGCAAACAACCAACGTGAACATCCCAGGGCGCTGGGCTTTCAAAATAGATGGCAGAGAAATAGATCCAGCCAACGGCTGCAGCCTGAGAG
Seq A exon
GGCAGTTTCTCCATCAAGGGGAGATCTTCTGGGAGAACTCAAACTGCAGCACCAAGTGCCGCTGCCTGGACTTCAACAATGAGATCTTCTGCCAGGAGATGGCTTGCGGCCCGTTCGAAGCATGCGAGCCGAAGATCAAGTTCTTCCAGTGCGTGCCTGTGGAGAGCAGCACCTGCGTGGTGTTCGGAGATCCACACTACCACACCTTCGATGGCTTCCTCTTTCACTTCCAGGGTTCCTGCTCCTACCTCCTCGCCAGGCAGTGCTGGCCAGGCTCCCAGCTGCCCTACTTCAACGTGGAGGCCAAGAATGAGAACCGAGGCGGCTCCTCCGTCTCCTGGCTGAGGGACATTTTTGTGGAGGTCTACTCGCACAAGATTGTCCTCCCAAAGGGCGGCTTTGGGAAAGCCAAG
Seq C2 exon
GTGGATGACTTGGTGGTGTCCTTACCCATCTCCTTGGAGCTGGGTGCAATCAAAGTCTACCAAAGCGGTTTGTCCACAGCCCTGGAGACTGATTTTGGCCTGCTAGTGACTTACGATGGCCAACACTACGCCTCCGTCTCCGTTCCTGGCACGTACATCAATGGCACGTGTGGTCTGTGCGGGAATTACAACAAAGACCCCGAGGACGATGCGCTGCGCTCGGATGGCAGGTTGGCTTCCTCCGTGCCAGAACTGGGCGAGAGCTGGCGAGTGCCGCACCCCGAGAGGAAGTGCTCCCCTGGCTGTGTGGAGAACTGCAGCGTCTGCGATGCCTCCACCGAATCCCTCTATTTCTCCCCCGAATATTGTGGCTTCCTCAACAAGAGTGGCGGGCCGCTGTGGGAGTGTGGCTCCGTCGTGGACCCCACTGCCTTCGTACATAGCTGTGTCTATGACCTGTGCAGCGCTCGGGAGAACGGCACCGGGCTGTGCCAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(47.8=76.8),PF127142=TILa=PU(8.8=8.9)
A:
PF127142=TILa=PD(89.5=37.0),PF0009420=VWD=PU(50.3=57.2)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCAGCATCCCAGGCTC
R:
ATCGTCCTCGGGGTCTTTGTT
Band lengths:
347-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]