DreEX6014066 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62534758-62536609:-
Coord C1 exon
chr5:62536444-62536609
Coord A exon
chr5:62536069-62536301
Coord C2 exon
chr5:62534758-62534937
Length
233 bp
Sequences
Splice sites
3' ss Seq
GGTATTCTTAAAAATTTTAGGCC
3' ss Score
4.02
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCAGGGTTCAATGGTGGGGATGTCAGCCATTTCTTCAACCTTCCAGGCTCCCGTTCAAACGAAGTGGTCAACATTGAACAGACCACTAATGTCAATGTCCCTGGAAGGTGGTTCTTCCGCATTGATGCTGACCAAATAGACCCAGCAAATGGCTGCAGCTACATTG
Seq A exon
GCCGATTTTACAGACGTGGAGAGGTTTTCTGGCTGTCAGACCAGTGTACTCAACGATGTAGGTGTCTTGACCTGGATAATGAGGTCATCTGCCATGAAACACCATGTGGTCAGTTAGAGACCTGTGAACAGGTGGAAGGGGCTTACTACTGCCAGCCCACACGCACCAGCACCTGTGTGGTGTTTGGAGACCCTCACTACCACACCTTTGATGGGTTCCTCTATCACTTTCAG
Seq C2 exon
GGTACTTGCTCATACCTGTTGGCTCGCCCATGCTGGGAAATGCCTGGTTTGCCCTTTTTCAGTGTGGAGGCCAAGAATGAGAACCGTGGTGTGCCCACGGTGTCCTGGCTGCGGGACGTGACAGTAGAGGTGTACAATCACCGTGTTACACTACCCAAAGGAACTCTGGGAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(47.8=76.8),PF127142=TILa=PU(8.8=8.9)
A:
PF127142=TILa=PD(89.5=65.4),PF0009420=VWD=PU(12.1=24.4)
C2:
PF0009420=VWD=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTTCAATGGTGGGGATG
R:
ACACCTCTACTGTCACGTCCC
Band lengths:
298-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]