RnoEX6035312 @ rn6
Exon Skipping
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46653427-46663481:-
Coord C1 exon
chr8:46663316-46663481
Coord A exon
chr8:46659636-46660048
Coord C2 exon
chr8:46653427-46653997
Length
413 bp
Sequences
Splice sites
3' ss Seq
TCTGATGTCCTTATTCCCAGGAC
3' ss Score
8.31
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAGGATTTAATGGTGGAAACCTCACAAATTTCTTCAGTCTTCCGGGGTCGAGAACCCCTGAGATTGTGAATATTCAAGAGACCACAAATGTCAACGTTCCAGGACGCTGGGCTTTTAAAGTTGACGGGAAGGAAATTGACCCGGCCAATGGCTGCACCTCTAGAG
Seq A exon
GACAGTTCCTTCGTCGAGGGGAGGTGTTTTGGGACGACCTGAATTGTACCATCAAGTGCCGCTGTCTGGATTTCAACAATGAGATCTACTGTCAGGAGGCCTCCTGTAGCCCCTACGAGGTGTGCGAACCCAAGGGCCGGTTCTTCTACTGCAGCCCAGTGGAGACCAGTACCTGTGTGGTGTTTGGGGAACCACACTACCACACCTTTGATGGCTTCCTCTTCCACTTCCAAGGCTCTTGTGCTTACCTGTTGGCCCGACAGTGTCTACAAACCTCCAGTCTCCCCTTCTTCAGTGTGGAGGCCAAGAATGAGCACCGAGGAGGCTCTGCTGTCTCATGGGTGAAGGAGCTCTCTGTTGAGGTGAATGGCTACAAGATTCTCATTCCTAAAGGAAGCTATGGGAAAGTCAAG
Seq C2 exon
GTTAATGACCTAGTGACTTCTTTGCCCGTCACCTTAGAGTTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACGTTTGACGGCCAGCACTACGCCTCCATTTCCATCCCAGGCTCTTACATAAACTCCACCTGTGGACTGTGTGGGAACTACAACAAAAACCCACTGGACGACTTCCTCCGCCCAGATGGCAGGCCCGCCATGTCCGTGCTGGACCTCGGAGAGAGTTGGCGTGTCTACCACACTGACTGGAAGTGTGGCTCTGGCTGCATAGACAACTGTACTCAGTGCGATGCGGCCACCGAGGCCCTCTACTTTGGTTCTGACTACTGCGGCTTTCTCAACAAGACGGACGGCCCCCTGTGGGAGTGCGGCACTGTTGTGGATGCCACGGCTTTCGTGCACAGCTGTGTGTACGATCTGTGCAGTGTGAGGGACAACGGCACGCTCCTCTGCCAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126-'5-7,'5-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(47.8=76.8),PF127142=TILa=PU(8.9=8.9)
A:
PF127142=TILa=PD(89.3=36.2),PF0009420=VWD=PU(50.3=57.2)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGAAGGAAATTGACCCG
R:
AGAGCCACACTTCCAGTCAGT
Band lengths:
343-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]