BtaEX6058753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32273176-32286264:+
Coord C1 exon
chr15:32273176-32273341
Coord A exon
chr15:32278993-32279405
Coord C2 exon
chr15:32285694-32286264
Length
413 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTCCTTCCTCCCCAGGAC
3' ss Score
12.24
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCGGGATTTAATGGTGGAAACCTCACCAATTTCTTCAGCCTGCCGGGGTCAAGAACCCCTGATATTGTCAACATCCAAGAGACAACAAACGTCAATGTGCCAGGTCGCTGGGCATTTAAAGTTGACGGGAAGGAAATTGACCCAGCCAATGGCTGCACCTCCAGAG
Seq A exon
GACAGTTCCTTCGGCGAGGGGAGGTGTTCTGGGATGACCTGAACTGCACCATCAAGTGCCGCTGTCTGGATTTCAACAACGAGATCTACTGCCAGGATGCCTCCTGCAGCCCCTACGAGCTGTGCGAACCCAAAGGCAGATTCTTCTACTGCAGCCCGGTGGAGACCAGCACGTGTGTGGTGTTCGGGGAGCCGCACTACCACACGTTTGATGGCTTCCTCTTCCACTTTCAAGGCTCTTGTGCCTACCTATTGGCCCGACAGTGTTTGCAGACTTCCAGTCTCCCCTTCTTCAGCGTGGAGGCCAAGAATGAGCACCGGGGGGGCTCAGCCGTCTCCTGGGTGAAGGAGCTCTCGGTGGAGGTGAATGGTTACAAGATTCTCATCCCCAAAGGAAGCTATGGAAAAGTCAAG
Seq C2 exon
GTTAATGACCTAGTGGCTTCTTTGCCCGTCACCTTAGAATTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACGGATTTTGGGCTCTTAGTGACATTTGACGGCCAGCACTACGCCTCCATCTCCATCCCAGGCTCCTACATCAATTCCACGTGCGGACTCTGCGGGAACTACAACAAAAACCCTCTGGATGACTTCCTGCGCCCTGACGGCAGGCCGGCCATGTCAGTCCTGGACCTGGGAGAGAGCTGGCGGGTCTACCACATGGAGTGGAAGTGCGACTCGGGCTGCGTGGACAACTGCACTCAGTGTGACACGGCCACCGAGGCCCTCTACTTTGGTCCCGACTACTGTGGCTTCCTCAACAGGACGGACGGTCCCCTGTGGGAGTGTGGCACTGTTATGGACCCCACGGCCTTCATGCACAGCTGCGTGTATGACTTGTGCAGTGTGAGGGACAATGGGACCCTCCTGTGTCAGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PD(47.8=76.8),PF127142=TILa=PU(8.9=8.9)
A:
PF127142=TILa=PD(89.3=36.2),PF0009420=VWD=PU(50.3=57.2)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGAAGGAAATTGACCCA
R:
GAGTCGCACTTCCACTCCATG
Band lengths:
342-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]