DreEX0080503 @ danRer10
Exon Skipping
Gene
ENSDARG00000024829 | tnw
Description
tenascin W [Source:ZFIN;Acc:ZDB-GENE-990415-262]
Coordinates
chr2:35535185-35542162:-
Coord C1 exon
chr2:35541899-35542162
Coord A exon
chr2:35535641-35535904
Coord C2 exon
chr2:35535185-35535315
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTGTACAACTGGCTTTTTAGATA
3' ss Score
6.34
5' ss Seq
CAGGTTATC
5' ss Score
-0.23
Exon sequences
Seq C1 exon
ACATAGATGCTCCTACTAACCTCATGACCAGGGAAGTGACAGAGGACTCAGCTTCGGTGACGTGGAACAAGGTGCAGGCTGACATTGATGGCTACATGCTGAAATACAGCTCTCTAGACGGCTCCGGCCAGGAGGTTCGAGTAGGAGCTGACAGCACCTCCTACAGGTTCACGGGTCTCAAGCCTGGTGTTCTCTACACAGTCTATGTGTGGGCCATCAAAGGCGCTCGCTCTAGCAAAAAGAGTTCAACAGAAGCGGAAACAG
Seq A exon
ATATAGACGCTCCTACTAACCTCTTAACGCAAGAGGTGACAGAGGACTCAGCTTCGGTGACGTGGAACAAGGTGCAGGCTGACATTGATGGCTACATGCTGAAATACAGCTCTCTAGACGGCTCCGGCCAGGAGGTTCGAGTAGGAGCTGACAGCATCTCCTACAGGTTCACGGGTCTCAAGCCTGGCGTTCTCTATACAGTCTCCGTCTGGGCTGTGAAGGGCTCGCGTTCGAGCAGAAAAGCCACCACAGAGGCTGAAACAG
Seq C2 exon
AGATTGATGCCCCCAAGAATCTCAAAGCCACTGATGTTCAGACTCAAACCTCCACTCTAACATGGAAAGCACCTCAGGCTAATATTGAAGGCTACATCTTGACCTACAGGGCTGAAGACGGCAGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024829-'11-12,'11-11,12-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.236 C2=0.250
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=PU(51.2=93.2)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGACTCAGCTTCGGTGA
R:
GCCTGAGGTGCTTTCCATGTT
Band lengths:
304-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]