GgaEX1059629 @ galGal4
Exon Skipping
Gene
ENSGALG00000004538 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr8:7061619-7063787:-
Coord C1 exon
chr8:7063524-7063787
Coord A exon
chr8:7062659-7062922
Coord C2 exon
chr8:7061619-7061882
Length
264 bp
Sequences
Splice sites
3' ss Seq
TGACTTTTTCCTCTCTGCAGAAA
3' ss Score
11.9
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GGATTGACAGCCCAACTAAGCTGTTGACTGACCATGTGACAGAGAATACAATCACTGTTGCCTGGAACAAAGTCCAGGCGTTAATAGATAGATACAGAGTGAATTACACCTCGGCTGATGGGGATACAGAGGAGAGAGAAGTGGAGAAAGACAAGAATGTTACCACCTTGGCAGGACTGGAGCCAGGCATGGAGTATGTTATTCACATCTGGGCAGAAAAGGGAGAACAACAGAGCAAGAGGGCCAGCACTGAGGCTGTGACAG
Seq A exon
AAATTGACAGCCCCACTCACCTGGTGACTGATCAAGTGACAGAGGACACAGTCACCATCTCCTGGGACAGGGTTCTGGCTCTCATAGATAGGTACATGGTGAATTACACCTCTGCCAATGGTGATACTGAGGAGATAGAAGTGGCGAAGAACAAGACTGCCACAACTCTGGTAGGACTGAAACCTGGCACTGAATATGTCATCTACCTCTGGGCAGAGAAAGGAGTGCGGCAGAGCAAGAGGACCAGCACTGAAGCAGTGACAG
Seq C2 exon
AATTGGACAGCCCAAAGAATCTGGTAACCGACCAAGTGACAGAAGACTCAGCCACGATCTCCTGGGATAGCGTCCGAGCTCCCATAGATAGGTACATTGTGAGCTACACTTCTGCTGATGGGGGCAGCAAGGAAATAGAAGTGGGGAAGGCCAAGAGCGTTACAACTCTGACAGGACTGAAAGCAGGCATGAAGTACACCATCCATCTCTGGGCAGAGCTGGGAAGCATGCAGAGCAAGAAGGCAAGCACTGATGCGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004538_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.287 C2=0.213
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=WD(100=89.9)
C2:
PF0004116=fn3=WD(100=86.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCACCTTGGCAGGACTG
R:
CATGCCTGCTTTCAGTCCTGT
Band lengths:
297-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]