MmuEX1026427 @ mm10
Exon Skipping
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:160110246-160116333:-
Coord C1 exon
chr1:160116070-160116333
Coord A exon
chr1:160114491-160114754
Coord C2 exon
chr1:160110246-160110509
Length
264 bp
Sequences
Splice sites
3' ss Seq
TAAGACTTTTAAACTTGTAGACA
3' ss Score
4.32
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATATTGATAGTCCCAAAAACCTGGCGATCGACCAGGTGACAGAGACCACTCTCAGTGTCTCCTGGGACCCAGTACAGGCTGACATTGACAGGTATGTGGTGCGCTACACCTCTGCTGATGGGGAATCCAAAGAATTCCTGATTGGGAAGGAACAGAGGAGCACAGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACAAGGTTGAAGTGTGGGCCCAGAAAGGAGCCCGGGAGAGCAAGAAAGCCAACACCGAAGGTCACACAG
Seq A exon
ACATTGACAGCCCCAAAAACCTGGTGACCAATCAGGTGACCGAAAATACAGCCACCATCTCCTGGGACCCGGTGCAGGCTGATATTGACAGATACATGGTGCGCTACACATCTGCTGATGGAGAGACCAGGGAGATTCCAGTGAGGAAGGAGAAGAGCAGCACTGTCCTCACAGGCCTGAGACCGGGTGTGGAGTACACGGTCCAAGTGTGGGCTCAGAAGGGGGCCCGGGAGAGCAAGAAGGCCAAAACCAAGGCCCCCACAG
Seq C2 exon
AAATTGACAGCCCCAAGAACTTGGTGACCAACCGAGTGACAGAAAATACAGCCACCATCTCCTGGGACCCAGTGCGAGCCAACATTGACAGGTACATGGTTCGCTACACCTCTGCGGATGGAGAGACTAAGGAGATTCCAGTGTCAAAGGATCAGAGTAGCACCATCCTGACAGGCCTGAAACCAGGCATGGAATATACCATTCATGTGTGGGCCCAGAAGGGGGCCCGGGAGAGCAAGAAGGCTGATACCAAGGCCCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725-'17-14,'17-13,19-14
Average complexity
S
Mappability confidence:
78%=60=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=0.566 C2=0.449
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
ENSMUST00000039178fB18503
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGTATGTGGTGCGCTAC
R:
TCTCCATCCGCAGAGGTGTAG
Band lengths:
302-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types