RnoEX0092419 @ rn6
Exon Skipping
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77852974-77858968:-
Coord C1 exon
chr13:77858705-77858968
Coord A exon
chr13:77857096-77857359
Coord C2 exon
chr13:77852974-77853237
Length
264 bp
Sequences
Splice sites
3' ss Seq
ACTAAGACTTTTCCTTGTAGACA
3' ss Score
5.46
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATATTGACAGTCCCAAAAACCTGGCGATCAACCAGGTGACAGAGACCACGCTCAGTGTCTCCTGGGACCCAGTACAGGCTGATATCGACAGGTATGTGGTGCGCTACACCTCTGCTGATGGAGAATCCAAAGAATTCTTGATTGGGAAGGAACAGAGGAGCACTGTCCTGACAGGCCTGAGGCCAGGCGTAGAGTACAAGGTTGAAGTGTGGGCCCAGAAAGGAGCCCGGGAGAGCAAGAAAGCCAACACCAAAGGCCACACAG
Seq A exon
ACATTGACAGTCCCAAAAACCTGGTGACCAATCAGGTGACAGAAAATACAGCCACCATCTCCTGGGACCCAGTGCAGGCTGATATTGACAGGTACATGGTGCGCTACACCTCTGCTGATGGAGAGACCAGGGAGGTTCCAGTGAGGAAGGAGAAGAGTAGCACGGTGCTCACAGGCCTGAGGCCAGGAGTGGAGTACACAGTCCAAGTGTGGGCTCAGAAGGGGGCCCGGGAGAGCAGGAAGGCCAAAACCAAGGCCCCCACAG
Seq C2 exon
AAATTGACAGCCCCAAGAACTTGGTGACCAACCGAGTGACAGAGAATACAGCCACCATCTCCTGGGACCCAGTACGAGCCACCATTGACAGGTACATGGTTCGCTACACCTCTGCGGATGGAGAGACTAAGGAGGTTCCAGTGTCAAAGGACCAGAGTAGCACCATCCTGACAGGTCTGAAGCCAGGCATGGAGTATACCATTCATGTGTGGGCCCAGAAGGGGGCTCGGGAGAGCAAGAAGGCTGATACCAAGGCCCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.573 C2=0.449
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAAGGAACAGAGGAGCA
R:
AGGATGGTGCTACTCTGGTCC
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]