DreEX0080649 @ danRer10
Exon Skipping
Gene
ENSDARG00000026895 | tor1l3
Description
torsin family 1 like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1859]
Coordinates
chr23:37466057-37470739:-
Coord C1 exon
chr23:37470489-37470739
Coord A exon
chr23:37466265-37466440
Coord C2 exon
chr23:37466057-37466190
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGCATGTTCTGTGTATTCAGGTA
3' ss Score
8.91
5' ss Seq
CAGGTTATA
5' ss Score
1.5
Exon sequences
Seq C1 exon
GTCTGAAGTCAGATTTAGGACAAGCCCTCTTTGGCCAGCACATTGTCTCTGATGTTGTACTAAAAGCTGTGTCCTCGTTTATGGCTGACAGCAACCCAAACAAACCTCTGGTCCTCTCTTTCCACGGGACTGCAGGAACTGGAAAAAACCATGTCTCTAAAATCATCGCAAGAAACCTTTACACTAAAGGAGAAAACAGCAAGCATGTTCACACATTTATATATGACAATCAAGATCCAAACGCGTACAGC
Seq A exon
GTATGGCTAAAGCAGTTCATACATACGAGTGTAGCAAATTTTCCACGCTCCACTTTCATTTTTGATGAAATGGACAAAATGCAACCACAGGTTATCGATGTGATCAAACCATTCCTGGACTACAACGCCCATGTAAATGGAGTGTCATTCCACAAAGCAATCTTCATTTTTCTCAG
Seq C2 exon
TAATACAGGTGGGAAAGTGATTGCCGACCTGGCCCTGGATTTCTGGAGAGAAGGCAGAAAACGGGAAGAGATAAAGATGCACAGCAGGGATCTAGAGATTATGATCTCTGAAAGCATCAGCAAGAATGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026895_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(68.6=100)
A:
PF063096=Torsin=PD(16.5=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCAGCACATTGTCTCTG
R:
GGCAATCACTTTCCCACCTGT
Band lengths:
246-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]