DreEX0081905 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50141929-50143954:-
Coord C1 exon
chr9:50143754-50143954
Coord A exon
chr9:50142319-50142448
Coord C2 exon
chr9:50141929-50142086
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACTGGTGTTGTTCTCTGCAGTCT
3' ss Score
8.83
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGCTGTTATATCTGCGGGCTCTGTTGGCTGTGAAAAAGCGCCGGCCCCCAGATGAGGTGACCAACCTGTTAAACGACACTGTGGACACGCACTTTTCTGCCCTGCAGGGTCTGCCTCTCAGTGTCGAGTACTTCGAGAAGCTCAACCCAGACTTCCTGCTCGAGATTGCCAAGGAATATCTCGCACTGTGTCCTGCCAAG
Seq A exon
TCTCCAGCTCTCAGTCAGCCTTCTTCACCTCAGCTGCAGCATGCCGCATCTGTGCTGGATACCGTGATGAAAGTAGTGCCTGGATTACTGCAGGCTGTCTTTCTGATGGCCAGAGTCCGATTTCAGTCAG
Seq C2 exon
GCGATATCGATGCGGCCCAGAGCAGCCTGCAGCACTGTTTGGATCAGAACCCAGCTCACGCTGATGCCCATCTCCTCATGGCTCAGATTCATCTCATTCAGGGCAACTACAAACTCTCCTCCCAGTCTCTGGAGCTCTGCCTCAGCCACAACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(17.1=19.4)
A:
PF134321=TPR_16=PU(18.2=22.7)
C2:
PF134321=TPR_16=PD(80.0=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCTCTCAGTGTCGAGT
R:
CAAAGTTGTGGCTGAGGCAGA
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]