GgaEX6042510 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19164544-19167183:+
Coord C1 exon
chr7:19164544-19164744
Coord A exon
chr7:19166446-19166575
Coord C2 exon
chr7:19167026-19167183
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGGTTTATTCCTAGCCT
3' ss Score
5.36
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAATTATCTTTCTTGCGTGCGGTCCTTGCTATGAAGAAGCATAAGAGACAAGAAGAAGTGATTGCCTTGCTGAATGATGTTCTGGATACCCACTTCTCAGCTTTGCATGGTTTTCCTCTTGGTGTGGAGTATTTTGAAAAACTGAATCCTGATTTCCTGCTAGAAATTATTAGGGAATATCTTAATTTTTGCCCAGCAGAG
Seq A exon
CCTGCAAGTCCTGGGCAGTCTCCTTCACCACTTCTCAAGCACTGTGCTTCTGTTCTTGAAACTGTGGTAAAAACTGTGCCAGGTCTTCAACAAGCTGTTTTTTTAATTGCAAAGGTGAAATATTTATCAG
Seq C2 exon
GGGATATTGAAGCAGCCCACACTAATCTTCGTTACTGTCTGGAAAGGGATCCTTCTTATGCAGATGCACACTTACTGATGGCCCAGGTCTATTTGGCTCAGAACAATCCTAAACTGTGTTCTCAATCCCTGGAACTCTGCCTGAGCTACAATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'13-17,'13-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145591=TPR_19=PU(4.3=6.8)
C2:
PF145591=TPR_19=FE(74.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACTTCTCAGCTTTGCAT
R:
AGGCAGAGTTCCAGGGATTGA
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]