HsaEX0067835 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166775786-166785845:-
Coord C1 exon
chr2:166785645-166785845
Coord A exon
chr2:166781059-166781188
Coord C2 exon
chr2:166775786-166775943
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGCTGATTTGTTTTGTTTAGCCT
3' ss Score
5.5
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GAATTAATCTATTTACATGCAGTTCTTGCCATGAAGAAAAATAAACGACAAGAAGAAGTTATTAATTTGTTAAATGATGTCCTGGACACTCACTTTTCACAATTAGAAGGTTTGCCTCTTGGCATACAGTATTTTGAAAAGCTAAATCCTGATTTCTTGTTAGAAATTGTTATGGAGTATCTGAGCTTCTGTCCAATGCAG
Seq A exon
CCTGCAAGTCCTGGGCAACCTCTTTGTCCACTTCTCAGGCGTTGCATCTCAGTCCTGGAGACTGTAGTAAGAACTGTTCCAGGTCTTCTGCAAACAGTCTTCCTAATAGCAAAAGTGAAATATTTGTCAG
Seq C2 exon
GTGATATTGAAGCAGCTTTCAATAACCTTCAGCACTGCTTAGAACACAATCCCTCTTATGCTGATGCTCATCTGCTGCTAGCTCAGGTTTACTTGTCTCAAGAAAAAGTCAAATTGTGTTCTCAGTCTCTTGAACTTTGTCTGAGCTATGATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(20.3=29.5)
C2:
PF134141=TPR_11=PD(78.1=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGAAGAAAAATAAACGACA
R:
TAGCAGCAGATGAGCATCAGC
Band lengths:
255-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)