MmuEX6101727 @ mm9
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66067039-66073300:-
Coord C1 exon
chr2:66073100-66073300
Coord A exon
chr2:66069346-66069475
Coord C2 exon
chr2:66067039-66067196
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATCTGATTTTCTTTGTTTAGCCT
3' ss Score
6.16
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GAATTAATGTATTTGCATGCGGTTCTTGCTACGAAAAAAAATAATCGTCAGGATGAAGTTATAAATTTGTTGAATGATGTTGTGAATACTCACTTTTCACACTTGGAAGACCTCCCGCTCGGCATACAGTATTTTGAGAAGCTCAACCCTGACTTCTTACTAGAAGTTGTTACCGAGTATCTGAATCTCTGTCCAATTCAG
Seq A exon
CCTGCAGGTCCTGGACAACCTCTTTCTCCAGTTCTCAGACGTTGTTCTTCAGTCCTGGAGACGATTATAAGAAGTGTACCAGGTCTTCCACAAGCTGTCTTCCTAATGGCCAAAGTGAAGTATTTGTCAG
Seq C2 exon
GTGACACTGAAGCGGCATACAACAATCTGCAGCACTGCCTCGAGCACAGCCCCTCCTATGCGGAGGCTCACCTCCTGATGGCACAGGTGTACCTGTCCCAAGACAAAGTCAAGCTGTGTTCGCAGTCGCTTGAACTTTGTCTGAGCTACAATTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(22.7=34.1)
C2:
PF134141=TPR_11=PD(75.8=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACTTGGAAGACCTCCCG
R:
CAGACAAAGTTCAAGCGACTGC
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: