DreEX0082621 @ danRer10
Exon Skipping
Gene
ENSDARG00000013082 | uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1056]
Coordinates
chr5:31212121-31213252:+
Coord C1 exon
chr5:31212121-31212325
Coord A exon
chr5:31212663-31212838
Coord C2 exon
chr5:31213080-31213252
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTAATAATGTATGAACAGGTT
3' ss Score
5.03
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
GGCTACTGCAGATTTCACAGGACAGAGTGGCTGTTTTGCTGTTAGCTGGTGGTCAGGGGACTCGTCTTGGAGTATCTTATCCCAAGGGCATGTATAATGTTGGGCTTCCAAGTGGGAAAACCCTGTACCAAATTCAGGCAGAGAGGATCCAGAAAGTACAAGAGCTGGCCAATGTGAGGCATGGCAGTAGGTGCACAATACCATG
Seq A exon
GTTCATAATGACCAGTGAGTTCACCCTGGGACCCACAGAGAAGTTCTTCAAAGACAACAAATATTTTGGCCTTTGTCCATCCAATGTGGTCATGTTTGAACAGAGGATGATACCAGCTGTGGGCTTTGATGGAAAGATCATCCTGGAGAAGAAAAACAAAATAGCCATGGCTCCAG
Seq C2 exon
ATGGAAATGGCGGCCTCTATCGGTCACTGGTGGACAACAAGATTTTAGAGGACATGGAGAGAAGGAATGTGGAGTTTCTTCACGTGTACTGTGTGGACAACATCTTGGTGAAGATGGCAGACCCGGTTTTTATTGGCTTTTGTGTAACCAACGGAGCAGACTGTGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013082-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(16.6=100)
A:
PF0170413=UDPGP=FE(14.4=100)
C2:
PF0170413=UDPGP=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGACTCGTCTTGGAGTA
R:
TGTTGTCCACACAGTACACGTG
Band lengths:
254-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]