RnoEX6015830 @ rn6
Exon Skipping
Gene
ENSRNOG00000012960 | Uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:RGD Symbol;Acc:1310630]
Coordinates
chr3:2582923-2583910:-
Coord C1 exon
chr3:2583706-2583910
Coord A exon
chr3:2583326-2583501
Coord C2 exon
chr3:2582923-2583095
Length
176 bp
Sequences
Splice sites
3' ss Seq
CACTGCTAGGTCTTTTACAGGTA
3' ss Score
4.4
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTTCCGACAGATTGCTCTGAACAAGGTAGCTGTCCTGCTGCTGGCCGGTGGGCAGGGCACTCGCCTGGGCGTCACCTACCCCAAGGGCATGTATCAAGTTGGTCTGCCCAGCCAGAAGACCCTGTACCAACTGCAAGCAGAGCGGATCCGGCGTGTTCAACAGTTGGCTGGTCAGCGACTGGGGACCCACTGCACCGTGCCCTG
Seq A exon
GTACATCATGACCAGTGAGTTTACACTAGGACCCACAATCAAGTTCTTCAAGGAGCACGACTTCTTTCACCTAGACCCCGCTAACGTGGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
Seq C2 exon
ATGGTAATGGAGGCCTGTACTGTGCACTGGCTGACCACCAGATCCTGGAGGACATGGAGCAGCGGGGTGTGGAGTTTGTGCATGTGTACTGTGTCGACAACATCTTGGTGCGGTTGGCTGACCCAGCCTTCATTGGCTTCTGTGTGCTTCAGGGAGCAGACTGTGGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012960-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.8=100)
A:
PF0170413=UDPGP=FE(15.5=100)
C2:
PF0170413=UDPGP=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAAGACCCTGTACCAA
R:
CCTGAAGCACACAGAAGCCAA
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]