GgaEX0013357 @ galGal3
Exon Skipping
Gene
ENSGALG00000009090 | UAP1L1
Description
NA
Coordinates
chr17:741211-744513:-
Coord C1 exon
chr17:744309-744513
Coord A exon
chr17:742587-742762
Coord C2 exon
chr17:741211-741383
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGCACCTGCTCCTACCCAGGTA
3' ss Score
6.4
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTTTGCACCAGATCTCACAGAACAAAGTGGCAGTGCTGCTGCTGGCTGGAGGACAAGGAACCCGCCTGGGAGTGAGCTACCCCAAGGGCATGTACAATGTGGGACTGCCCAGTGGCAAAACCTTGTATCAGATCCAAGCAGAAAGGATCCGCAAAGTGGAGCAGCTCGCTGGCCAGAGGCACCACTGCAAGTGTACCATCCCCTG
Seq A exon
GTACATCATGACAAGTGAGTTCACGCTGGGGCCAACAGAGGAGTTCTTTGTAAAACACAGCTACTTCAACCTGGATAAAGCCAATGTAATCATGTTTGAACAGAGGATGCTGCCAGCTGTCACCTTTGATGGGAAGGCCATCTTGGAGGAGAAGGGGAAAATTGCTATGGCTCCAG
Seq C2 exon
ATGGCAATGGTGGCTTATATCGTGCTTTGGTGGATAATAAGATCTTGGATGACATGAAGCAGCGTGGTATCCAGTATGTCCACGTGTACTGTGTAGACAACATTCTTGTCAAAATGGCAGATCCAGTCTTCATAGGCTTCTGTGTTTCCAAAGGAGCAGATTGTGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.2=100)
A:
PF0170413=UDPGP=FE(14.9=100)
C2:
PF0170413=UDPGP=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAGAAAGGATCCGCAA
R:
GGCACCACAATCTGCTCCTTT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event