MmuEX6099486 @ mm10
Exon Skipping
Gene
ENSMUSG00000026956 | Uap1l1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:MGI Symbol;Acc:MGI:2443318]
Coordinates
chr2:25364101-25365085:-
Coord C1 exon
chr2:25364881-25365085
Coord A exon
chr2:25364512-25364687
Coord C2 exon
chr2:25364101-25364273
Length
176 bp
Sequences
Splice sites
3' ss Seq
CACTGCTAGGACATTTACAGGTA
3' ss Score
-0.4
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTTCCGACAGATTTCTCTGAACAAGGTAGCTGTCCTGCTGCTGGCGGGTGGGCAGGGCACTCGCCTGGGCGTCACATACCCAAAGGGCATGTATCAAGTTGGGCTGCCCAGCCAGAAGACCCTGTATCAACTGCAAGCAGAGCGGATCCGGCGTGTCCAACAGTTGGCTGACCAGCGACAGGGGACCCACTGCACTGTGCCCTG
Seq A exon
GTACATCATGACCAGTGAGTTTACCCTGGGACCCACAATCAAGTTCTTCAAGGAGCATGACTTCTTCCACCTGGACCCCACTAACGTAGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
Seq C2 exon
ATGGCAACGGGGGTTTGTACTGTGCACTGGCTGACCACCAGATCCTGGAGGACATGAAGCAGCGGGGTGTGGAGTTTGTGCATGTGTACTGCGTAGACAACATCTTGGTGCGGCTGGCTGACCCAGTCTTCATTGGCTTCTGTGTGCTTCAGGGAGCAGACTGTGGTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026956-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.5=100)
A:
PF0170413=UDPGP=FE(15.2=100)
C2:
PF0170413=UDPGP=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAACTGCAAGCAGAGCGG
R:
CTTAGCACCACAGTCTGCTCC
Band lengths:
253-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types