DreEX0083393 @ danRer10
Exon Skipping
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29063199-29065987:+
Coord C1 exon
chr13:29063199-29063423
Coord A exon
chr13:29065496-29065639
Coord C2 exon
chr13:29065884-29065987
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTTCTCTGTCTCAGGTC
3' ss Score
12.17
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGGCAGCGATTACAGTGAAGTTCTCCCGGACTCGTTTCCATCAGCTCCTGCCGAACCGCTGCCAGAATTCCAGAGTGAGCCCGAGGATGCATTCATAGTAAAAAACAGACCCGTCAAACTGTCCTGCAAGGCCGCCCCTGCCACACAGATATACTTTAAATGCAATGGAGAATGGGTGAACCAGAATGACCATGTGACCAAGGAAAGTCTGGACCATATCACAG
Seq A exon
GTCTGGTAGTGAGAGAAGTAGATATCTCTGTCTCCCGGACGCAGGTAGAGGAGTTGTTTGGGCTGGAGGATTATTGGTGCCAGTGTGTTGCCTGGAGCTCGGCAGGCACCACAAAGAGCCGTCGGGCTTACGTCCGCATCGCCT
Seq C2 exon
ACTTGAGAAAGAACTTTGAGCAGGAGCCGCTTGGCAGGGAGGTGCGTCTGGAGCAGGAAGTATTACTGCAGTGTCGTCCACCAGAGGGCAGCCCGCCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAAGTTCTCCCGGACT
R:
CGGCTCCTGCTCAAAGTTCTT
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]