GgaEX1062205 @ galGal4
Exon Skipping
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11347913-11353127:+
Coord C1 exon
chr6:11347913-11348134
Coord A exon
chr6:11351224-11351367
Coord C2 exon
chr6:11353024-11353127
Length
144 bp
Sequences
Splice sites
3' ss Seq
CGTCTGTCTGTCCCTTTCAGGGC
3' ss Score
12.6
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGCTGGAGTACAGCGAGGTGCTGCCCGACTCCTTCCCATCGGCGCCGGCAGAGACGCTGCCCCACTTCTTGCGGGAGCCACAGGATGCCTACATCGTCAAAAACAAGCCTGTGGAGCTGGTCTGTAGGGCCAACCCTGCCACCCAGATCTACTTCAAGTGCAATGGGGAGTGGGTAAACCAGAACGACCACGTCACCACTGAGAGCCTAGATGAAGTCACAG
Seq A exon
GGCTGCTGGTGCGGGAGGTTCAGATCGAGGTGTCCCGGCAGCAGGTGGAGGAGCTCTTTGGCTTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCTGCGGGCACCACGAAGAGCCGCAGGGCGTACGTCCGCATTGCAT
Seq C2 exon
ACTTGCGGAAGAACTTTGACCAGGAACCACTGGGCAAGGAAGTACCACTGGAGCAGGAGGTGCTGCTGCAGTGCCGGCCACCCGAGGGGGTGCCACAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGACTCCTTCCCATC
R:
AGTGGTACTTCCTTGCCCAGT
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]