MmuEX6048603 @ mm10
Exon Skipping
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 netrin receptor B [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60779668-60783282:-
Coord C1 exon
chr10:60783058-60783282
Coord A exon
chr10:60780095-60780238
Coord C2 exon
chr10:60779668-60779771
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACCCGTTCTCTCCCGGCCAGGCT
3' ss Score
8
5' ss Seq
CCTGTACGC
5' ss Score
1.91
Exon sequences
Seq C1 exon
GCGTTGACTCTGCTGGCCAGGTGCTCCCAGACTCCTACCCATCAGCCCCTGCGGAGCAGCTGCCGTACTTCCTATTGGAGCCACAGGACGCCTACATCGTAAAGAACAAGCCAGTGGAACTGCACTGCAGAGCCTTCCCTGCCACGCAGATCTACTTCAAGTGTAATGGCGAGTGGGTCAGCCAGAATGACCACGTCACACAGGAGAGCCTGGATGAGGCCACAG
Seq A exon
GCTTGCGGGTGCGAGAGGTGCAGATCGAGGTGTCACGGCAGCAAGTGGAGGAACTCTTCGGGCTCGAGGACTACTGGTGCCAGTGCGTGGCCTGGAGCTCTTCGGGAACTACCAAGAGTCGCCGAGCCTACATCCGCATTGCCT
Seq C2 exon
ACTTGCGCAAGAACTTTGACCAGGAGCCTCTGGCCAAGGAGGTACCCTTGGATCATGAGGTCCTTCTGCAGTGCCGCCCACCGGAGGGAGTGCCTGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTGCCGTACTTCCTAT
R:
GCACTGCAGAAGGACCTCATG
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types