RnoEX0096625 @ rn6
Exon Skipping
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30357251-30358925:-
Coord C1 exon
chr20:30358701-30358925
Coord A exon
chr20:30357666-30357809
Coord C2 exon
chr20:30357251-30357354
Length
144 bp
Sequences
Splice sites
3' ss Seq
GACGTGTCCTCTCCTTTCAGGCT
3' ss Score
11.58
5' ss Seq
CCTGTATGC
5' ss Score
0.98
Exon sequences
Seq C1 exon
GCATTGACTCTGGTGGCCAGGCACTCCCAGACTCCTTCCCATCAGCACCCGCGGAGCAGCTGCCTCACTTCCTGCTGGAACCAGAGGATGCCTACATCGTAAAGAACAAGCCAGTGGAATTGCACTGCCGAGCCTTCCCTGCCACACAGATCTACTTCAAGTGTAATGGCGAGTGGGTTAGCCAGAAAGGCCACGTCACGCAGGAGAGCCTGGATGAGGCCACAG
Seq A exon
GCTTGCGAATACGAGAGGTGCAGATAGAGGTGTCGCGGCAGCAGGTGGAGGAACTCTTTGGGCTCGAGGACTACTGGTGTCAGTGCGTGGCCTGGAGCTCTTCGGGAACCACCAAGAGTCGCCGAGCCTACATCCGCATTGCCT
Seq C2 exon
ACTTGCGCAAGAACTTTGACCAGGAGCCTCTGGCGAAGGAGGTACCCTTGGATCATGAGGTCCTTCTGCAGTGCCGCCCACCAGAGGGAGTGCCTGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCCAGACTCCTTCCCAT
R:
GGTACCTCCTTCGCCAGAGG
Band lengths:
250-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]