DreEX0083400 @ danRer10
Exon Skipping
Gene
ENSDARG00000092722 | unc5da
Description
unc-5 homolog Da (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-080908-2]
Coordinates
chr21:16275552-16303833:-
Coord C1 exon
chr21:16303601-16303833
Coord A exon
chr21:16277362-16277505
Coord C2 exon
chr21:16275552-16275655
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCTCTGTGCAGGAC
3' ss Score
11.83
5' ss Seq
CTTGTCAGT
5' ss Score
-0.42
Exon sequences
Seq C1 exon
TGTCTGAATTATTTCATTTTATTTATTTGCAGGGTCACGTGATGGTCAGTCGGCAATGTCTGGAACGCTTCCTCACTTCCTGCAGGAGCCCGATGATGCATATATCGTCAAAAGCAACCCCATCAAACTCCGCTGCCGTGCGAGACCAGCACTCCAGATCTTCTTTAAATGCAACGGCGAGTGGGTCCATCAGAACCAGCACACTTCTTTGGAGCACATCGAACTGGGAACAG
Seq A exon
GACTGAAGATCCGCGAGGTGATGATAAATGTGTCTAGACAGCAGGTGGAGGATTTCCATGGACCGGAGGACTACTGGTGTCTGTGTGTGGCCTGGAGTCATCTGGGCACCGCCAAGAGTCGCAAAGCCACCGTTCGCATTGCTT
Seq C2 exon
ACCTGAGGAAGAATTTCGAGCAGGAACCGCAGGGAATGGAGGTGCCAATCAATGGCATGATCGTCCTCCACTGCCGTCCACCTGAGGGAGTGCCTGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092722-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGTCAGTCGGCAATGT
R:
GATTGGCACCTCCATTCCCTG
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]