DreEX0083489 @ danRer10
Exon Skipping
Gene
ENSDARG00000040869 | upp1
Description
uridine phosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-050306-2]
Coordinates
chr16:16303553-16304380:-
Coord C1 exon
chr16:16304332-16304380
Coord A exon
chr16:16303801-16303912
Coord C2 exon
chr16:16303553-16303711
Length
112 bp
Sequences
Splice sites
3' ss Seq
AACACATTTTCAATGCACAGGTC
3' ss Score
6.86
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAAAACAGAAAATGCCGCTGGGTGAAGAGAAAAACGGAAAATGCGACGG
Seq A exon
GTCAATATATGTAAACAATCCACACTTGGACTCTATGACAGATGACATTCTTTACCATTTTAACTTGGGAACATCCACTCATGATTTGCCAAAGATGTTTGGGGATGTCAAA
Seq C2 exon
TTTGTGTGTGTAGGGGGAAGTCCATGGAGGATGAAATCTTTCACTGAATACATTGCCAAAGAACTGGGACTGGTGGACCCCAATGCAGAATACCCAAATATATGTGCAGGAACTGATCGTTATGCCATGTACAAAGTGGGACCTGTGTTGTCTGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040869-'1-5,'1-3,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
C2:
PF0104815=PNP_UDP_1=FE(29.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGAAAATGCCGCTGGGT
R:
GACAGACAACACAGGTCCCAC
Band lengths:
203-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]