RnoEX6043332 @ rn6
Exon Skipping
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89324093-89329123:+
Coord C1 exon
chr14:89324093-89324158
Coord A exon
chr14:89327249-89327369
Coord C2 exon
chr14:89328965-89329123
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTCTCACTTTTCGTTTCTAGCAG
3' ss Score
9.38
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCCCGCTACAGTGAGAAAATGGCAGCTACAGGAACTGAAGCAAAGGACCTGGAAAACCATCACAA
Seq A exon
CAGTGACTGCCTCGTCCAGCTTTCAAATCCAAACATAGCCACGATGAAGGAAGACGTTCTCTACCATTTCAACCTCAGCACTAGCACACACGATTTCCCCGCTATGTTTGGAGATGTGAAG
Seq C2 exon
TTTGTGTGTGTTGGTGGAAGCTCCTCCCGGATGAGCGCCTTCATCAAGTATGTGGCCGCAGAGCTGGGCCTTGACCACCCAGGGAAAGAATATCCCAACATCTGCGCAGGCACTGACCGCTACGCCATGTATAAAGCCGGGCCCGTGCTGTCTGTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972-'11-8,'11-6,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
C2:
PF0104815=PNP_UDP_1=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTACAGTGAGAAAATGGCA
R:
CTCACAGACAGCACGGGC
Band lengths:
221-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]