GgaEX6020673 @ galGal3
Exon Skipping
Gene
ENSGALG00000013073 | UPP1
Description
NA
Coordinates
chr2:82222285-82225812:+
Coord C1 exon
chr2:82222285-82222349
Coord A exon
chr2:82225065-82225182
Coord C2 exon
chr2:82225654-82225812
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCATGCTGCTGTCCTGACAGAGA
3' ss Score
7.15
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
Seq A exon
AGAAAATTCTATCCATCTGTGCAACCCTCACCTGGAAAAAATGAAAGAAGACATCCTATACCATTTTGCTCTTGGGACCGGTACCCATGATTTTCCTGCACTGTTTGGAGATGTAAAG
Seq C2 exon
TTTGTGTGTGTAGGAGGAAGTCCTTCACGGATGAAAGCTTTTATTGCCTACATAGCTGAAGAACTTGGACTTGGGAGCTCTGGTGGTGACTACCCCAACATCTGTGCGGGAACTGACCGTTACGCCATGTACAAAGTGGGACCCGTTCTGTCAGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-'5-2,'5-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
C2:
PF0104815=PNP_UDP_1=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGCATACATGGCTCCT
R:
TGACAGAACGGGTCCCACTTT
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]