MmuEX6083994 @ mm10
Exon Skipping
Gene
ENSMUSG00000020407 | Upp1
Description
uridine phosphorylase 1 [Source:MGI Symbol;Acc:MGI:1097668]
Coordinates
chr11:9125633-9131788:+
Coord C1 exon
chr11:9125633-9125698
Coord A exon
chr11:9129488-9129605
Coord C2 exon
chr11:9131630-9131788
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTGTTTCTAACAGTGA
3' ss Score
10.06
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCCTCCTACAGTGAGAACATGGCAGCTACAGGAACTGAAGCAAAGGACCTTGAAAACCATCACAA
Seq A exon
TGACTGCTTCATCCAACTTTCAAATCCAAACATAGCAGCAATGAAGGAAGACGTGCTCTACCATTTCAACCTCAGCACTAGCACACACGATTTCCCTGCTATGTTTGGAGACGTGAAG
Seq C2 exon
TTTGTGTGTGTTGGTGGAAGCTCTTCCCGGATGAACACCTTCATCAAGTATGTGGCTGCAGAGCTGGGCCTTGACCATCCAGGGAAGGAATATCCCAACATCTGTGCAGGCACTGACCGCTACGCCATGTATAAAGCCGGGCCCGTGCTGTCTGTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020407-'16-15,'16-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
C2:
PF0104815=PNP_UDP_1=PU(51.5=98.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAGTGAGAACATGGCAGC
R:
CTCACAGACAGCACGGGC
Band lengths:
219-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types