DreEX0085123 @ danRer10
Exon Skipping
Gene
ENSDARG00000016903 | wdr5
Description
WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
Coordinates
chr21:18249641-18250023:+
Coord C1 exon
chr21:18249641-18249716
Coord A exon
chr21:18249825-18249858
Coord C2 exon
chr21:18249949-18250023
Length
34 bp
Sequences
Splice sites
3' ss Seq
GCATTCCCTTCATATTTTAGTAC
3' ss Score
7.61
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGACGACAACCCACCAGTGTCATTTGTGAAGTTCTCCCCCAATGGCAAGTACATCCTGGCTGCCACTCTGGACAA
Seq A exon
TACTTTGAAGCTTTGGGACTACAGCAAAGGAAAG
Seq C2 exon
TGCCTGAAAACTTACACCGGTCATAAAAACGAGAAGTACTGCATATTTGCTAATTTCTCTGTTACTGGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016903-'20-16,'20-15,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(62.5=100)
A:
PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
C2:
PF0040027=WD40=FE(57.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGACAACCCACCAGTGT
R:
ACTTCTCGTTTTTATGACCGGTGT
Band lengths:
113-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]