GgaEX1063980 @ galGal3
Exon Skipping
Gene
ENSGALG00000002659 | WDR5
Description
NA
Coordinates
chr17:7886705-7887902:+
Coord C1 exon
chr17:7886705-7886780
Coord A exon
chr17:7887328-7887361
Coord C2 exon
chr17:7887828-7887902
Length
34 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTGTTGTTTTCTAGCAC
3' ss Score
9.26
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGACGATAACCCTCCTGTGTCTTTTGTGAAGTTCTCCCCGAATGGCAAATACATTCTAGCTGCAACTTTGGACAA
Seq A exon
CACTCTTAAGCTTTGGGACTACAGCAAAGGAAAG
Seq C2 exon
TGCCTGAAGACGTACACAGGACACAAAAATGAGAAGTACTGCATATTTGCCAATTTCTCTGTTACCGGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002659-'17-17,'17-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(62.5=100)
A:
PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
C2:
PF0040027=WD40=FE(57.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTCTCCCCGAATGGC
R:
ACCGGTAACAGAGAAATTGGCA
Band lengths:
119-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]