HsaEX0071174 @ hg19
Exon Skipping
Gene
ENSG00000196363 | WDR5
Description
WD repeat domain 5 [Source:HGNC Symbol;Acc:12757]
Coordinates
chr9:137019588-137020889:+
Coord C1 exon
chr9:137019588-137019663
Coord A exon
chr9:137020462-137020495
Coord C2 exon
chr9:137020815-137020889
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTCTGTCTTGCAGCAC
3' ss Score
11.97
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGACGACAACCCCCCCGTGTCTTTTGTGAAGTTCTCCCCGAACGGCAAATACATCCTGGCCGCCACGCTGGACAA
Seq A exon
CACTCTGAAGCTCTGGGACTACAGCAAGGGGAAG
Seq C2 exon
TGCCTGAAGACGTACACTGGCCACAAGAATGAGAAATACTGCATATTTGCCAATTTCTCTGTTACTGGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196363-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085535=VID27=FE(22.5=100),PF0040027=WD40=FE(62.5=100)
A:
PF085535=VID27=FE(9.9=100),PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
C2:
PF085535=VID27=PD(7.2=32.0),PF0040027=WD40=FE(57.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGAACGGCAAATACAT
R:
CCACCAGTAACAGAGAAATTGGC
Band lengths:
113-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)