BtaEX6047403 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047031 | WDR5
Description
Bos taurus WD repeat domain 5 (WDR5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105475]
Coordinates
chr11:104937309-104938197:+
Coord C1 exon
chr11:104937309-104937384
Coord A exon
chr11:104937855-104937888
Coord C2 exon
chr11:104938123-104938197
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCGGCCCCTCTGCCTTGCAGCAC
3' ss Score
9
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ATGACGACAACCCCCCCGTGTCCTTCGTGAAGTTCTCTCCGAACGGCAAGTACATCCTGGCCGCCACCTTGGACAA
Seq A exon
CACGCTGAAGCTCTGGGACTACAGCAAAGGCAAG
Seq C2 exon
TGCCTGAAGACGTACACGGGCCACAAGAACGAGAAGTACTGCATATTCGCCAACTTCTCCGTCACCGGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047031-'22-16,'22-15,24-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(62.5=100)
A:
PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
C2:
PF0040027=WD40=FE(57.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGTCCTTCGTGAAGTTC
R:
GTGACGGAGAAGTTGGCGAAT
Band lengths:
127-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]