MmuEX6099891 @ mm10
Exon Skipping
Gene
ENSMUSG00000026917 | Wdr5
Description
WD repeat domain 5 [Source:MGI Symbol;Acc:MGI:2155884]
Coordinates
chr2:27531639-27533411:+
Coord C1 exon
chr2:27531639-27531714
Coord A exon
chr2:27532993-27533026
Coord C2 exon
chr2:27533337-27533411
Length
34 bp
Sequences
Splice sites
3' ss Seq
TCCCACTCTCTGTCTTTCAGCAC
3' ss Score
10.17
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGATGACAATCCTCCAGTGTCCTTCGTGAAGTTCTCTCCAAATGGCAAATACATCCTGGCTGCAACTTTGGACAA
Seq A exon
CACACTGAAGCTCTGGGACTACAGCAAGGGGAAG
Seq C2 exon
TGCCTGAAGACATACACTGGCCACAAGAATGAGAAGTACTGCATATTTGCCAACTTCTCCGTGACAGGCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026917-'24-22,'24-21,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(62.5=100)
A:
PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
C2:
PF0040027=WD40=FE(57.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAAGTTCTCTCCAAATGGC
R:
CTGTCACGGAGAAGTTGGCAA
Band lengths:
119-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types