DreEX0085313 @ danRer10
Exon Skipping
Gene
ENSDARG00000071084 | wipf1b
Description
WAS/WASL interacting protein family, member 1b [Source:ZFIN;Acc:ZDB-GENE-110815-1]
Coordinates
chr6:10545719-10552259:-
Coord C1 exon
chr6:10552053-10552259
Coord A exon
chr6:10548461-10548574
Coord C2 exon
chr6:10545719-10548291
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTTGTTTCTTCAAGATG
3' ss Score
5.79
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCCTCTTCCGCCTCCACCTCCTTCTGGCCGGCCAGGAGGAGGAAGTATGAGGTCATCGCCAGCTCCTCCCCCACCAAACAGACCGGGTGTAGAGACTCACCGTGGGGGCAGTAGGCCACCACTTCCTCCAGACAGACCTTCCTCTGGACCTCTGCCGCCACCTCCTGCACCTATAGGCAATGGATACCACAGTCAGCATCATATAG
Seq A exon
ATGAATGGGAATCACGCTTCACATTCCGGCCTGTATCGGATCTTCCACCCCCAGATCCCTACATCCCCTGTCAAAAGACCTACCCCAGCAAAATAGTGCGAAATGAAAGCCGAG
Seq C2 exon
GTTCAGGGAAGAAAGAGCGAGGAGCACCTCCCCTGCCTCCTATACCTAGGTGAAAAAGAAAAAGGCCTGACAATCCTTCCCTTTCCTGATTTTCTAAGTTTCTCTGGAACTGTTTGTTTCTGTGATGTTGTTTTTTCTGCCAGAGTAATTCATTAAAATATATATAAAAAAATCATGTATAAAAGAAGTATAAAAACAGTTTTCTGTTAAAACACCCCTTATTCTATACAGTTTTGTTGTTGTTTGCTTCAGAAATGATTCTCAATTGCTTTTTTGCCTGTCGAGTGATGAGTTACAATAATACTAAAGCTAAGTTTGACTGTTTTGTTTTTGAATGAGAAGAATTGTTGTGCCATTTATTGTCCCTCAGGGACATGCTGAAAGTTTTAGGAGTTTGCCACTTCTACTGTTTTGATGTTTATGTCTAAGCAATACACTTCTCAAGGATATAATGAAAAACTTATAGGCCTTTGGGTGCAGGATATCGTCGTATTTCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071084-'7-12,'7-11,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGAGGTCATCGCCAGCT
R:
AGGGAAGGATTGTCAGGCCTT
Band lengths:
245-359
Functional annotations
There are 4 annotated functions for this event
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI002695; ELM sequence: ESRFYFHPISD; Overlap: FULL
PMID: 12437929
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 17229736
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]