MmuEX6102201 @ mm10
Exon Skipping
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73429610-73435158:-
Coord C1 exon
chr2:73434946-73435158
Coord A exon
chr2:73434030-73434143
Coord C2 exon
chr2:73429610-73432465
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTTTCTCCCACAGATG
3' ss Score
12.71
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCCCCTCCCACCACCACCTCCAATAAACAGAAATGGAAGCACAGCTCGGGCCCTGCCTGCCACCCCTCAGTTGCCATCCAGGAGTGGAATGGACAGTCCCAGAAGTGGGCCTAGGCCTCCTCTTCCTCCTGACAGGCCTGGTGCTGGGGCGCCGCCCCCACCCCCACCCTCCACATCAGTTCGAAATGGCTTCCAAGACTCATCGTGTGAAG
Seq A exon
ATGAGTGGGAAAGCAGATTCTACTTCCATCCGATTTCTGACTTGCCGCCTCCAGAGCCATACGTACCGACAACCAAGACGTATCCCAGCAAACTGGCCAGAAACGAAAGCCGAA
Seq C2 exon
GTGGATCCAACAGAAGAGAAAGGGGCGCCCCACCCCTTCCTCCCATCCCGAGGTGATCTCTGCCTGCTCCGTTCTACCCAAGCTCCAAAGCTGCTTCTGTTGTTGCTGTTTGAAAACTGCACACCCCTCCTCTCGATTTGCCACGCCCCCCCCAGAGAGAGTAGGAGGGAGGAACGGAAGCTGAGGAGGGGATCCCTGCGTGTGGGGGTGGGGATCGGGGAAAGAAGCGCCTAGCTGTTTATGTTGTATATATTCCTGAGCTATTGCTTGTATCAGCTGCAGCCTGCCAGGGTCAGACATCCACTGCTTTTTTGCAACAGACTGTAGTTGTTAAATCCCCTGAGAGCTGGTTTTCTCTATGCCTTTCTTGCTCACATGGCCTCTGGCCTGTTTCCACGAACCACACCGCCCAAGCGAGTTGCGAGCAAGCCCTGTGGTTACAGAACGTCCGATCTTCGGCTGTCTGAGGAAGGCTCCAGGACAGAGCTGTCTTAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284-'25-23,'25-22,26-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTTGCCATCCAGGAGTG
R:
ACAGCAACAACAGAAGCAGCT
Band lengths:
256-370
Functional annotations
There are 4 annotated functions for this event
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI002695; ELM sequence: ESRFYFHPISD; Overlap: FULL
PMID: 12437929
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 17229736
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types