GgaEX1064194 @ galGal3
Exon Skipping
Gene
ENSGALG00000009321 | Q5F3Q7_CHICK
Description
NA
Coordinates
chr7:18043390-18048845:+
Coord C1 exon
chr7:18043390-18043602
Coord A exon
chr7:18044510-18044623
Coord C2 exon
chr7:18045931-18048845
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTGTTCTTTCAGATG
3' ss Score
11.5
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCCCCTGCCACCACCACCTCCCATCAGCAGGAACGGTAGCACCTCGAGGGCTTTACCTGCCGCTCCCCAGCTGCCTTCCCGGGCTGGGCTGGAGAACCAGAGGGGTGGGCCCCGGCCACCACTTCCCCCAGACCGGCCGGGAACGGGTGCACCACCACCACCACCACCACCTTCAGCAGCGCTCCGGAACGGCTTCCAGGAGTCGGGCGATG
Seq A exon
ATGAGTGGGAAAGCAGATTTTCTTTCCATCCTATATCTGATTTGCCACCTCCAGAGCCATATGTACCTGTGAATAGAAGTTACCCCAGTAAACTAGCAAGAAATGAAAACCGAG
Seq C2 exon
GAGGCTCTGCTCGAAAAGAAAGAGGTGTCCCCCCGCTTCCACCTATACCAAGGTGAAGTGGGTTCTGGCCCATTTTTGGGCAACATCTGTTCTACAAGATTTCTTTTGAGTCAGCTCTCCTGCCCACATCGTTGGAAAGTTGTCTGTTTTGCTCTATTTCCACTTTTGGCTTGTCAGCTGGAATAAACTTTAGTCTATTACAAAAGTAATAGACAAAGCTTATGAACTATAGTTGCTCAAAGCTATAAATTTTGTTTGCTTAAACTGCAGGCTGTCCTGAAATGCATTTTACGGACCATGCCCGACATACATGCGTCATGCTTACCAGGTCCAGCCCTGTCCTCTTGAGAGTTCCGTAGAGGTCTGGCTTTGAATTTAACGAGAGCTGGAACAAAGCTGTTTCATTCATGTGGGGTACAGTGGCTGTATTATTTGAACAATCAAGTACAATCTGTTTGCTGTTTATAAACCAACTGCCAGGGAATACTGTATAGCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCACCTCGAGGGCTTTAC
R:
CCAGAACCCACTTCACCTTGG
Band lengths:
245-359
Functional annotations
There are 4 annotated functions for this event
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI002695; ELM sequence: ESRFYFHPISD; Overlap: FULL
PMID: 12437929
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 17229736
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]