RnoEX6017434 @ rn6
Exon Skipping
Gene
ENSRNOG00000018406 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:RGD Symbol;Acc:620887]
Coordinates
chr3:60150021-60155985:-
Coord C1 exon
chr3:60155928-60155985
Coord A exon
chr3:60154728-60154841
Coord C2 exon
chr3:60150021-60152389
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCGTTTGTTTCTCCCACAGATG
3' ss Score
12.5
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CCCCCACCCCCACCATCCACATCAGTTCGAAATGGCTTCCAAGACTCATCTTGCGAAG
Seq A exon
ATGAGTGGGAAAGCAGGTTCTACTTCCATCCGATTTCCGACTTACCGCCTCCAGAGCCGTATGTGCCAACGACCAAGACGTACCCCAGCAAAGTGGCCAGAAGTGAAAGCCGAA
Seq C2 exon
GTGGATCCAACAGAAGAGAAAGGGGCGCCCCACCCCTTCCTCCCATCCCGAGGTGATCTCTGCCTGCTCCGCTCTACCCAAACCTCCAAAGCTGCCTCTATTGTTGCTGTTTGAGAACTGCACTCGCCCCGCCCTCTTTCTTTGCCCCCCTCAGAGAGAGGAGGAGGGAGGAACGGAAGCTGAGGAGGGGATCCCTGCATGTGGGGCTGGGGATCGGGAAAGAAGGGCCTGTTTATGTTGTATATATTCCTGAGCTATTGCTTGTGTCAGCCGCAGCCTGCCAGGGTCGGCTGCTGGGATCGATAGGCTTTTGTTATAAGGAGGCAGAGAAGAATCGTATCCCAGCTTTCAGCCCCACGAGGTCAGGCATTCACTGCTTTTTTGCTACAGGCAGTAGCTGTTAAATCCCCTGAGAGCTGGTTTTCTCTATGCCTTTCTTGCTTACTTGGCCTCCGGTCTGGTTCCGAACGAACCACAGACCGCCCAAGCAAGTTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018406-'13-13,'13-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCATCCACATCAGTTCG
R:
GGATCCCCTCCTCAGCTTCC
Band lengths:
244-358
Functional annotations
There are 4 annotated functions for this event
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 12372256
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, pull down. ELM ID: ELMI002695; ELM sequence: ESRFYFHPISD; Overlap: FULL
PMID: 12437929
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
PMID: 17229736
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, green fluorescent protein tag, mutation analysis, nuclear magnetic resonance, pull down, structure based prediction, western blot. ELM ID: ELMI001705; ELM sequence: FYFHPISDLPPPE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]