RnoINT0165607 @ rn6
Intron Retention
Gene
ENSRNOG00000018406 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:RGD Symbol;Acc:620887]
Coordinates
chr3:60150021-60154841:-
Coord C1 exon
chr3:60154728-60154841
Coord A exon
chr3:60152390-60154727
Coord C2 exon
chr3:60150021-60152389
Length
2338 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CATCTGCTTTCTCCATCAAGGTG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATGAGTGGGAAAGCAGGTTCTACTTCCATCCGATTTCCGACTTACCGCCTCCAGAGCCGTATGTGCCAACGACCAAGACGTACCCCAGCAAAGTGGCCAGAAGTGAAAGCCGAA
Seq A exon
GTAAGTATATGCCGGAGCGTCGTGCGAGCTCCTACTGTGAGAGCCTGGGTTCCAGGTGAGACGCACGGACACCAGGCCTCTAGCCTCAGAGGAGTAGGAAGCCCTGTTAGGAGCTGTGTGCACCCTGGCAGGACATCCACCATGAGCAAGAACTCTCTGAAGGAAACATTACCATCTTGGAATACATCTGGTGGACCAGTGTTAAGTTATATTATTTTACTTCTTTGGTTCATCTCCTCCATTTTGACCTTCCTAGGAGAGCAAAGGTCAGTCCATCTTCTATTTCCTCTAGATCAAGACTGGAAAAGTGTCATAAAGTAAAGCAAAATACTACCTTGATCTTTTAAATGCATTATGACCATATGTATTCAACATATATGCATATAAACATATGTATATGTATTCAACACAGTTTCATACATACATACATACATACATACATACATCCTCACAGGACAGATTTTTTCATTCTACCAGATACTTCCTATTGTTTTCCACCTAATTCTGACTTTTTACACATCGTACTAGACCATGTTCATGGTAGGTTTTTACATGACATCGCTTAGTAAACACACCCCTGTTTTGTCACATGGTTTTAGTCCATGGGAGTCCATTAAGTCTCCATACAAGAACTTGCCAACACTGCACATGTCTCCCATTGCTTGCTAACATGTGGCTGCCTGCATCACCTTCTCCCTGTTGAAGAAGAAATGTGAACCAGAAGGTAGAATAGAGGCATTAGAATTTCACAGCCAAATATGCACAGGACTAAGAAAAAATAGCATGGAATTCCACACCAAGGTATGCATGGGACTAATTCAAAATAACATGGACTAAGGAAACATGGCTCTGATGAGATTCAGGCTCACAGAGACTTAAGCCTCAGAATTAATCCCTCAGGTCAGACAGTCATCACAGCACCCGGAGCTAGGCCCTTGTTCTCTCACATAGTAAGTACCTCAGAGAAGCTCAGGGTCTACCCAGTCCCTCTCAGCACACAGCTCTTGAGTAACTGTTGGTCAGTGGGTGCCCAGCCTTTGAGCAGCTTAATAGCAGCTGAAGTCAAGGCTGCTTAGAAGCCTTCAGGAAGAGCTTACAGAAAAAAAACAAAAAAAAACAACAACAAAAAAACAAAAAAAACAAAAAACAAAAAAACAAAAAGCAGAGCCAGATCAAAAGCAGAGCCAGGGACACAGATTTGTGCCTTGGGCTGCAGTGCACGCCATAGCAGCAGCAGTTTCTATCATGGACACTTTGGGGTTAAATGAAGTAAGTCACATTTTCGTTTTGTGCTTCTGCTGCAGACTTTAAAGAGTTAGGAAACATTGTAAGGAATTTTCCAAGAACAAATGCCAGAGGTAAACACAATATTCTTACTTGAAGGAAAACTCCAATCCTAGAAATTTTATTTAATTGGAATACTGTGTTTATAGACAGTGCATGCCCAGAGTTGTAACTATAAGGAAACTATTGTGTTGGTGGTCGAAGTTTTGGATGGAAATAAGCCCTCACATGAAACAGATGCCTTTGACTGTTTTGTGAATGAATGGGTGTACGTGTTCATCAATAGGGCACAACCTTCTGTTAGAGGAACGGGAACAAATCCACTTGAAGAAGCTGTTTGCTTACACTCTTAAATACTTTCCCTCATTTATAGAATTTAAGTATCAGTTAGATGTTTAAATCAATAACAGAGCCACCTTCCCTTGCCCTCGAGATTTTTAATGACATAGCTAAACACATTCCTTCTCTATCCCTCTTTCTTTACGACTCCAGTGCATGACTTGAGGACCAGGGCAATGGCCTGCTCACTCTCACAACGTCCTTGTGTGACAGAGACCCTGAAAGAGAATAGGCATTTAAAATGGTTTTTAAGTTGGCCATTCTTCATCGCCTAATCCACTATCTTTACAGATTCTTTTTCAGTGTTTCTAGAATGTACTGAAAAGAAACCTAAAATTGATTTTAACAGTAAATCATTTAGTGAAAATGAAGCTTTATCAGATAACCCATTTTATTCTGCTCTTTTCTATGCCTCAGCCTCTCAGACAACCTTGAGCTGTGCTCCCTCTTTGCAGCATTGTGCAGAGCCACCTCTCATCTCGCTGGCTACTTGTGGTATATCAGATGACAGCCAGACTACATGACTAATGGCTGACTTATATAACTGTGAGGAAGTACTCAGTAGCCAGCACCCACCATCTTCTCACATCACTTGGTGCTTCCCTACTCCCAGCCTCAAGCTCTGGGTAAAACAGTGAGCACCTTTGCAGCCAACTTTCCACAGTAAACCCAAGCTTCTAACCAAAATTACTTTTCATCTGCTTTCTCCATCAAG
Seq C2 exon
GTGGATCCAACAGAAGAGAAAGGGGCGCCCCACCCCTTCCTCCCATCCCGAGGTGATCTCTGCCTGCTCCGCTCTACCCAAACCTCCAAAGCTGCCTCTATTGTTGCTGTTTGAGAACTGCACTCGCCCCGCCCTCTTTCTTTGCCCCCCTCAGAGAGAGGAGGAGGGAGGAACGGAAGCTGAGGAGGGGATCCCTGCATGTGGGGCTGGGGATCGGGAAAGAAGGGCCTGTTTATGTTGTATATATTCCTGAGCTATTGCTTGTGTCAGCCGCAGCCTGCCAGGGTCGGCTGCTGGGATCGATAGGCTTTTGTTATAAGGAGGCAGAGAAGAATCGTATCCCAGCTTTCAGCCCCACGAGGTCAGGCATTCACTGCTTTTTTGCTACAGGCAGTAGCTGTTAAATCCCCTGAGAGCTGGTTTTCTCTATGCCTTTCTTGCTTACTTGGCCTCCGGTCTGGTTCCGAACGAACCACAGACCGCCCAAGCAAGTTGCTGAGCAAGCCCTACGTGAAGCCCTGTGGTTGCAGGATGTTCAATCTTTGGCAGTCTGAGGTAGGCTCCAGGGCAGAGCTGTCTAACAGAAACCTAATGTGAGCCCCATACCCAGTCTTAAAATGACCAGCAGCCATGTTTATAAGGGTAAAAGGAAACAGATGAAAAGAATTCCATTTTACTTAGCTCTGTGCATCTGAAATGTCACTTCCACCTGGATTATTAATGAGGTATTCACATTTTTGGTACTAAGTCCTCTCACTCCAGTAACCATTCTGTATTTAGAACAAGCATATGGACAGATTTCAAGTGTCTACACGTGCTTAAGCACCTCACAGTCAGCCGGTCTGGAAGACAGGAGCTAGTACGGAAAGCTTGTGCCTAAAAAGGCAAATTGAATTTTAGCAATTCAAGAGATGTCCCAAGACCAAGTCATAACTTGATACAATGTTAGGCAGACAGTGAGACCTTAGCTTTTTGACCCTTATTTTGCCTTTTTCCTTAATATGTATGTACAGGTGTTTCTTCAGAGTATCATTATCTAGTCAGAAATGTATCTAGTCCAGTTTACCATAGCATGGAATAAATCCACTGCAAGAGAAAGGGAAACGTGTAGTGTGGGCTCTTCCTGGCTCAGAACCAGCTGGCTTGTGCACTCACTGGTCACTGGCCTTGCAGATCTTCTGTGGTTCTTCAGTCCTCCACTCCAGAGAAAACTTCTTCCTCAGGTCAGGAAAAGCTAGGAGGGCAAGATAGGAGAAGAAAGTCAGAGAATGTATCAAATCAGAATTATGGGAGAAGGGGACAGCTTTGATGATGGGCAGAATTCTACACAACCAACTGGGTCAAGTAGATTAAGGAGCTTACCAGTAGAACCCGGAAAGCACTGGTTTTGGATTTCTTGGGAGAATCGTTTTGGATCTGTGCAAGTAAGTTCCGCTAAAGGACCGACCGTGAAAAGCGTCAGGCATGCCTTTTATATACATAGAATTTTGTTTACAATGTTTTACTGGGACTTTGAAATCTAGCTGTAGAGTTGGAAAATGATTTCCACTTTGATGTTTTGTATCGTCGTGTTTAATGTTACTGTTGTCTTTTAAAGCACATGGCCACATGTGTATCTACCTGAGCTTTGTATTTTGGGTCCAGTGTATTGCTCACGTGTTGCTGGGAGATGCTAATGACAACAAAAAAAAAAATCAATCCAAAGAAAAATGGAAAGACATTCCTATTTATAGAATGATTGTTTCATTTATATAAAAGCATAACGTAGGAGTTCTAATAGATGAAACGTCTAATAAATTATAAAGTGATTGATTTGAATATATTGTATTTTTATAACTTTCCTTGCCAAAGCTCTGGACCTAGTTCTTTAGAGAGTAACTTTCCTTTCTTCTCCTCCACCATTTGTCTGCCTTTCATGAAAACAAAGAAATAAAAGGTTCAACAAGCTTGACAATTTTTTTATTTCTAACATTTTTAAATGTATTTCAAATTCTTTGATCTGATATTCACTAGAATCAACATCTTTTTGATAGACACTCAGTGACCCACTTTACTGGAAATAGAATTGGTCCTTCCTTGTGCTGTGTATGGCAGTGAAAGGTCAGACTCAAAAATTGTGGGTCTGAATTTTTTAAGGAATCGTGAAAATTGAAACAAGTCCTGGGTAAATCTCAGTTTTTCAGGTGCATTCCTAAGTCAGGAACGGGGTCACAGCTCAAAGTTGCCATTCATAATAAAAAGGGTTTGGAGAGTATTTTGCAAAGAATGTTTCATTAATACACCTACATCCTATCTTTGGAAGTCAGTGACCCAATTGCATTTAAAACTCTGGAGAAGTTCTGTGTTTATCTTAACCTATGGCAGACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018406:ENSRNOT00000024922:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]