HsaINT0182993 @ hg19
Intron Retention
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:12736]
Coordinates
chr2:175424302-175431911:-
Coord C1 exon
chr2:175431798-175431911
Coord A exon
chr2:175427331-175431797
Coord C2 exon
chr2:175424302-175427330
Length
4467 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTGTCTGTTTTTTCACCAAGGTG
3' ss Score
7.19
Exon sequences
Seq C1 exon
ATGAGTGGGAAAGCAGATTCTACTTCCATCCGATTTCCGATTTGCCACCTCCAGAGCCATATGTACAAACGACCAAAAGTTATCCCAGCAAACTGGCAAGAAACGAAAGCCGGA
Seq A exon
GTGAGTATTTCTGCCAAGGTTTTTGAAGATTCACGCTTGAGTAGCCTGAGTGACACTCGGGCTATATAGAAAGTCCAGGCTTCTTGCCTGGAGTGGGGTAGAGAACCCTTTGGAGCCATCTACATTCTAGTAAATTCCCCTTCCACAGGCAGTGAGGAAATTGCAGATGCCCAGAATGCATATGAGAAACAGTTATTTTAATGTGTCATTACAAGCTCAAAATACCGTGGTTTGCTAGTATTAAATTTTATTATTTTACTTCTTTGGACGTCTTCCTCTGTTTTCATCTTCCTGAGACAGCACAAGTAGAGCCATCTTCTATTCCTTCTAGTTTTGAAATTGGCATAATGTCTGATTAATTATAACAAAAACTCCCTTTAACTGCCTTGATCTTTTAAACGTATTGTAATCATAGCTTTACAGAGCATTACATGAAAATGTAAATATATCCATAATCTCTCCACATAATAGATATTTTCATTTTACCAGATTCTCATCCAATTTTTTATCCATATAATTCTGTTTTTTTATGTAGTTATAATGACGATGTACAGTTTTTTGGCGGGGTTTACATAACATTGCTTAGTAAATAGTGCCCATGTTATCACATGGTTTTTATTTCAGCATATAGTAATTTACCATTACCATGGACATTTAAATTATTTCTGTTGTTCTGCTAATGTAGGTAATGCTACCATAAAGAACTAAATTGCTTTTCCTCCATTGAAGAAGAATGTCAACAAGAAAGGAAAAATAGACAAACTGGAATTTTATAACAGTAAATGTATAGGAAGTGTTACAGCTCTTTGAGAATTTGTCTAGCAGGCTTTCCAGGGTTTTGCTGGAAAGCCTCTGAAATTTACTTTTAAAAAAACACAATAGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATATAAAAATACAAAAATTAGCTGGGCATGGTGGTGTGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTAGAACCCGGGATGCAGAGGTTGCACTGAGCTGAGATTGCGCCATTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCATCTCAAAAAAAATAAAAATAAAAAAAAATGTATACAACGAAGAAAGAATTAGCATGAAATATGCATATGTCATCCATGAGGCTGAGGTTCGTGGCAGCCTTAGCCTCAGAGCCAAATTCCCAAACCAGAAATAGAGAAAACTTAAGCAAACAAGTCAAATATGTCACAACACCCCTAGCGATGGCCCCACTCCCTAACAGAGCACCTTACATGTACTCAAAGCCTACTGATTCTTTCCTAACACAGTTTAAAGTAATTTTTGGTTGGTTGGTTCCAAACCTTATAGGAGATTAATAACAGCTAAAGTTAAGACTGGTGAGAAGCAAAATCACTGACATGGGAGAGAAGTGACAGATGGCAGTCCCAGGTCAGAGGAGGAGACAGGAACATGGCTGTGCTGTGTGTCACAGCGCAGGACAACACCAGATGTTTCTGTTGGGTTGAATTTCTATTGGGTTAAATGGAATTAAATTAATTGAGTCAAACTGTGCTTTGTGCCTCTGTAGAAAAATTTAAAGAGTTAGAAAATATAGGAAAATTTCCATGGACAAATGCTAGAAGAAAACAGAATACTACTGCTTAAAAGGAAAACTTTAATTCCTGAAAAGATTTGTTTCTGTGGAAGACTGCATTCATAGACAATACCTAATGAAGAAGTATAGCTATAATAAAATTATTATACAAGAGTTGATGATTGAAATTTTTAGTGAAGGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGACCAACATGGAGAAAACCTGTCTCTACTAAAAATACAAAATTAGCCGGGCATAGGGGCGCATGCGTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTCAGGAGGTGGAGGTTGCGGTGAGCAGAAGTCGCCATTGCACTTGAGCCTGGGCAACGAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAGTGTTAGTGAAAAGTAAGTTTTCACATGGGACAGATATCTTTGAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCAGAAGAAGGGCTTCTGTTTGATAAGAGTACAGCCCTTCTTCCTTCTTGGGCACCAATAAATGAATTGACTTTAAGGAGTTGTTCATATAGACTCCAAATATTTTTCCTAACTTATTATTTGCTTCTTATTCTAAATATTATTTCTATTTTTAAATTGGTAATAGACCATCTTCCCTGTACCCTCTAGATCTTTAATGGAATAGCTAAGCATATATCTTCTCCCATCCTCCTTTAAGACTTGAGTAGGCAATGTAAGGACTAGAACTGTGTCCTGCTCACTATTGCACCTTCCTTGAGGGGCACAGAGCCTGAAACATAAAGGGCATTTTCAAGTATTTCTTTTTAAAAATTTTCTTATAGAGACAGGATATCTCTATGTCACCCAGGCTGGTCTTGAGCTTCTGGCCTCAAGTAGTCCCCTGCCTTAACCTCCCAAAGCACTGGATTATAGGCATGAGCTACCATGCCTCGCCTAAAAGTAGTTTTTAAATTGGTGAATTAATTTCCACAGTCTACCAAAATTTTTTTGTAGATTTGCCTTAAATATTTCCAGCATTAGGCATGTTTAATATTTTATAATGATAATGGATCATCTAACAAAAATAAATAAGGCACCGTCGAGTACCAAGTTTTCCTCTGCTCTGCAGCAGCCTCAGCCTCCAAGCCCACAGCCTGAGAGCGCACCCAGACAGCCCTGAGCAGTACCGAATGCACTTGGAGTGCCCTCTAATTACAGCTTTGGACAAGGCCAGCCCTCATTCTACTAACCACTTGTGGCGGGTCAGTTGATGGTCAAGGCCCCATGATAGGTGTCTGGTTTACATCCAGATGAGTCTTTTCTCAGATGCCTGCCCAAGAAAATATTTGGTTGGGATGGTGAGAGGAAGAGGTGCTTCTTTCAGTGTTTTCTCCTAACTCCCTTCCTTGCTCAGAAATTTGGTTCTTTCTCAGAAATCCCTAAGTGGACCAGTAGGGTCCCTATCAAGATGCCTACTTGAGGAATCTGCCAGTTCCAGCCCACTGAGTCTCAGAGCAGTGGTTAGAGCAGACCTACCTGATTGACACATGCCCCAGTTAGACCTGTTCACAACATCTGAGCACCTGACCTCATGCCAAACACCTGTTAAATCCTCAACAAATGTTTGTGTAGTAAATGAATTTTTTTTATGTGAATGGGTTTTAAGCCTAGTTACAGTGGACTGATAGCCCATGAATAGCTTGGTTTTGGTTTTTATTTTGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCATTGCAGCCTCGACCTCTCAGGTTCAGGTGATCCTCCCACCACAGCCTCCCAGGTAGCTGGGACTATGGGACAGGCGCACACCAACATGCCCGGCTAATTTTTGTGGAGACAGGGTTTTGCTATGTTGCCCAGACTGGTCTCAAACTCCTGAGCTCAAGCCATCATCCCTCCTCAACCTCTCAAAGTGCTGGGGTTACAGGCGTGAGCCACTGCAACTGGGCCGTGAATAACTTTTAAAAGAACACATCGACAGAGTACTTGAAAAGGTGTTCAACATCACTAACTTTTATGAAACTGCAAATAAAACTATAGTGAGATACAACTTTACACCCATTAGAATGGCTACTGTCAGAAAAGCTTTCTAATTTTTAATTAGAAGATACCTAAATGCCCAACAAAAGGGAATTGACTAGGTAGACTGTAGTGTAGTCATATTTTGGAATGCAGACTGTCATTAATAATCTTTGCAAAGAGTAATGCCTTCGAAAGATGTTCAAACTGACTATATGATCTTATTTCTGGAAGAAAACGGGGAACTGTTTCTAAGTAAAAAATATACACATAATTGGTTATCTCTGGGTGCTGGAGGAATGGGTGAGTTCTTTGTTTTTACTCATCCATATTTTCTAAATCTATAATAAGCACACACTGTGATAAGAAGAAAATGATTTTTTTTAACTTTGTGCAAGTACTTGGGAGCCAGTGATGGATCACCCACCATGATGTTTATTCAGAACATTACTTGCTTGTTTTCACCTCTCACTTCTCATCCACAACATACGCCAGTTAGCTGACAGCCCTGGTCATAGGGATGAGGTAGTGGGTACCCGTGCAACCATCCCCGAGTTTCCACGATGAGAACATCAGCTTTCTAACCAAAATTATATTTTGTCTGTTTTTTCACCAAG
Seq C2 exon
GTGGATCCAACCGAAGAGAAAGGGGTGCTCCACCACTCCCTCCCATCCCGAGGTGATCTTTGCCTGCTCTTCTCTACCCAAGCTCAAGAGCTGCTTCTGTTGCTATCTAAGAACTGCATACCCTCCTCCCTGCTTCTTCCCTTGTGCCTCATGTATGGGCAGGAGGAAAGGTGGGAGGGGGAGTGGGAATATGCGTGTGTGGGTGGGAATCGGTAAGAAATGCACCTAGCTTTTCATATTGTGTTTATTCTCCAGGCTATTGCTTGCTTCAGCTGCAGCCTGCCTGTGCTGGCTGCTGGGGTCGATAGGCTTTTGTCGTAATAGGCAGAGATGACTTGCATCCCAGCTTTCCACCAACCAAATTCAAACATTCACTGCTTATTTGTTACAGACTGTAATTATTAAAGTCCCTGAGAGCTGTTTTCTCCCGTTCCTTTTTCGCATGCTTGGCCTCCTCTCTGTTTCTATGAACCACAGACCACCTAAGCAAGCTGCTGAGTAAGGGCTCACTGGAAACTTGCAGTCACAGGATGTCCAATCTTTGGCAGTCCGAGCTTGGCTCTAGGACAGAGCTGTCCAATAGAAATATAATGTGAGCCCCATATACAATTTTTACATTTCTAATATATTTTAAACAAGTGAAGTTAATATGCATCCAAAATATTTCAACCTGTAATCAACATAAAATTTTAATGAGATATTTTATATTATTTTTTGGTACTGAATCTTCAAAATCCAGAGTGTATTTTACACTTACCGCACATCTCCATTCAGACTAGTCACATTTTTAAGTGCTCAGTAGCCACATGTGGCTGGTGGCTACTGGATTAGACAGCACGAGTCTGGAAGATGGAAGCTAGTGCAGAAACCTCTTGTTTAAAAAACAAAAAAGGCAAGATGGGCTTGAGCGATTCAAGAGGCAACTAAAAATAAAATTAGGACCCAGCACCTTGTTTGACACACAGTTTGACCTTCGATTTTCCTCCCTTAACTTCCCTCTTCCCTTAATATCTGTATACAAGTGTTGCTTCAAAGTACCAAGGTCAGAAATTGATTGAGTACGGTTTACTAAAGTCATGTGGAATAAAGCCATTGGAAACAAATGGAAAGCCTGTCGGGACTTCTGGGCTCAGAACCAGCTGGCTCACGCACTCCACTTGTCAGCTGGACTTCTGCCTTGTGAAATGGAAGCAGCCTTTGTTCCTTTCTGGCTGAGCAAGCTCCTGAGGCTGGGAGAGACTAGGAAGGCTTGGTAGGAGGGGAAAAAAGTCAGGAAAATATATCAAATCAGAAACATGGAAGAAGAAGGGAACCGATTTGAGTTGGTGGGCAAAACTCTAAAAATCTAAATCTGATGCTTATGTAAGGGTTGAGCGAATTAGGGAGATTGCTAGTGGAAATTGGAGGGAATTTGTTTTGCATCATTTGTCTAGGATCTATGCAAATATAGCTCCACTAAAGGACCATAGGGAAGAGCCAGCCTTGCCTTTTCTTATATGATTTTGTTTACAAAATTTTACTGGGACTTTTAAATCTAGCTATAGAGTTGGGAAAAAATATTTCCACTTAGATATTTTACATGGTTTTGTTTAAAATTACCATTACTTGTTTTTTAAAAACACATGACCACATATGTATATGTATATCTACCTAAACATTGTATCATGGTTTCAGTATGTTATTCATGTATTACTGGGAGATGCTACCAAGAAACCAACCCAAAGAAAATTCTGAAAAATACATTTCTATTTATAGAATAAATGTTTCATTTATATAAAAGCAAAAGAACTTAGAGTTCTAATAAATGGGATGTCTAATAAATTATGAAGTTACTGATTTGAATATATTATATTTCTATAACTTCCTTGCCAAAGTCCTGATTTAGTACATTAGAGAACCTGTGTTTCCTCTCTCCTCTACCATTCATCTCTCTTCCATACAGTCATTTGGGCTTTTTACTCAAAGAGAATCAAGAAATAATAAGGTATAACAAGCTTGGCAAAGTGTTGGCTTTTTAAAAAAAAATTTTTTTAATCTCTAGCAGTTTGGTAATTTAGCAGCATCATTTATTTGGGATTCTTTTATCTGATTTCAACAGTGAAAAACATCCCTATGATAAAGCCTAATGACCCATTTCACAAAAGATGGAATTTGCCCTTCCTAGAAAATATGACGGAGAAAAGTCTGACTCAGAGAAAGTGGGTCTGAATTTTATAAGGGGTAGTAAGAATTGGACAATTCCTTTGCATATCTGAACTTGGCAGGTACCGTTCTAAATCTGAAACAGGGTGATAGCTCAAAGTTGCCATTCATCCAGAATAGATTGTTTTAGAATGTAGTGTTTAAGTGACTGTTTCATTAATACACCTACACCCTTTCTTTGAAAGTTTGCAACCTAATTGCATCTAAAACTATGAATAAGTTCTGTGGTAAAATCTTAAACTATGGAAAATTACAAAAATGAATTTTTCTTCCCTGAAATCAGAGCTTACATGTGTGTTTTTTTATAACATTTTCAGATAAATGTATTCAACATGTAATACAGTATTTTAACATTCACCTCTTATTTTATATTGAAATGTATTACAGTATTAAAACTCAGTGTTCAGTATTTATTTCACTATGCATTTTATTTAGTAAAAGCCAGGAGAAATGTTTAATCCAATGGTGCCTTACTTTGTGATTTAAAAGAAATCAACTTTTTTTTATGTCTAAGTAGTAGATTATTTGCATATTTGTAAAAACTGTTAGGTCTTTATATTTTAAAGTGTAATACCAGTTTTGTTATTTTAGTAGCAGAAATGGGATGATTGTTAAAGTTCCCCAAAAATGTTGGCATGAAATTAATTTTTCCCTCCTTATAGTCAAGGACCGTAGAGGAAGAAAAACTTTTTTTTCATACCATGCACTATGTAAACAGACACATTTTGCTATCTGTGTCATCAGGATAGTGTAAGTGGTAGGGTAGAGACTACCCTAGACATCTGCATCTTTGTAAGTTAGCCAGACAATAAAGAAAAGCAGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935-WIPF1:NM_003387:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)